Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 C 1.50707 * 109.47256 * 119.99764 * 2 1 3 5 5 C 1.35666 * 126.32385 * 300.00170 * 4 2 1 6 6 O 1.34235 * 109.21317 * 179.72604 * 5 4 2 7 7 C 1.35085 * 109.39079 * 0.44501 * 6 5 4 8 8 C 1.39748 * 126.20667 * 179.81990 * 7 6 5 9 9 H 1.07998 * 120.00183 * 187.95612 * 8 7 6 10 10 C 1.40159 * 120.00020 * 7.96546 * 8 7 6 11 11 N 1.30809 * 120.00183 * 191.86523 * 10 8 7 12 12 Si 1.86800 * 119.99923 * 11.86152 * 10 8 7 13 13 H 1.48500 * 109.47286 * 270.00379 * 12 10 8 14 14 H 1.48497 * 109.47302 * 30.00404 * 12 10 8 15 15 H 1.48505 * 109.47180 * 150.00124 * 12 10 8 16 16 C 1.39549 * 107.58998 * 359.56551 * 7 6 5 17 17 H 1.09007 * 109.47008 * 60.00253 * 1 2 3 18 18 H 1.09004 * 109.47383 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47238 * 300.00424 * 1 2 3 20 20 H 1.09002 * 109.47679 * 239.99876 * 2 1 3 21 21 H 1.08998 * 109.46996 * 180.02562 * 3 2 1 22 22 H 1.08997 * 109.46851 * 299.99836 * 3 2 1 23 23 H 1.08993 * 109.47239 * 59.99783 * 3 2 1 24 24 H 1.08005 * 125.38863 * 0.02562 * 5 4 2 25 25 H 0.96996 * 119.99850 * 354.72946 * 11 10 8 26 26 H 1.08001 * 126.77646 * 180.26547 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7849 -0.3605 2.5177 6 8 2.3938 -1.2320 3.3373 7 6 3.0529 -2.1538 2.6019 8 6 3.8071 -3.2204 3.0984 9 1 4.3982 -3.8234 2.4251 10 6 3.7963 -3.5076 4.4702 11 7 4.6685 -4.3446 4.9701 12 14 2.5366 -2.6950 5.5847 13 1 3.0887 -1.4200 6.1089 14 1 1.2985 -2.4181 4.8131 15 1 2.2211 -3.6009 6.7184 16 6 2.8391 -1.8514 1.2565 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 1.1882 0.4827 2.8331 25 1 5.2724 -4.8245 4.3820 26 1 3.2215 -2.3922 0.4035 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075538441.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = -44.966135 kcal Electronic energy + Delta-G solvation = -10582.315990 eV Core-core repulsion = 8625.458630 eV Total energy + Delta-G solvation = -1956.857360 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.65288 -36.89978 -35.74716 -32.37701 -30.81100 -27.90100 -26.30534 -23.65592 -21.67387 -21.19792 -18.94651 -17.85509 -16.57554 -15.85850 -15.60244 -15.21576 -14.67138 -14.30312 -13.96344 -13.33345 -13.00916 -12.98989 -12.90767 -12.06057 -11.98246 -11.83092 -11.57582 -11.37800 -11.30918 -10.07871 -9.53907 -9.29117 -6.61829 1.06790 1.35917 1.59872 1.75334 2.06385 2.17740 2.87662 3.08611 4.06407 4.12795 4.43467 4.56131 4.74224 4.85961 4.87429 5.03673 5.12128 5.17459 5.26547 5.33524 5.45729 5.48865 5.61962 5.89182 6.13287 6.41838 6.47765 6.94774 7.87406 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.073317 B = 0.012609 C = 0.011614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.812622 B = 2220.168745 C = 2410.378194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.028 4.028 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.176 4.176 6 O -0.219 6.219 7 C 0.156 3.844 8 C -0.530 4.530 9 H 0.074 0.926 10 C 0.013 3.987 11 N -0.830 5.830 12 Si 1.109 2.891 13 H -0.264 1.264 14 H -0.261 1.261 15 H -0.266 1.266 16 C -0.402 4.402 17 H 0.078 0.922 18 H 0.040 0.960 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.039 0.961 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.207 0.793 25 H 0.282 0.718 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 8.500 -4.457 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.047 4.047 3 C -0.190 4.190 4 C -0.121 4.121 5 C -0.239 4.239 6 O -0.120 6.120 7 C 0.105 3.895 8 C -0.560 4.560 9 H 0.092 0.908 10 C -0.202 4.202 11 N -0.454 5.454 12 Si 0.929 3.071 13 H -0.189 1.189 14 H -0.186 1.186 15 H -0.192 1.192 16 C -0.423 4.423 17 H 0.097 0.903 18 H 0.059 0.941 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.058 0.942 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.223 0.777 25 H 0.093 0.907 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.655 8.594 -2.612 11.802 hybrid contribution 1.235 -0.839 -1.994 2.491 sum -6.420 7.756 -4.606 11.071 Atomic orbital electron populations 1.21772 0.93306 1.01351 1.02633 1.19598 0.96402 0.95703 0.92994 1.21770 1.00319 0.94320 1.02638 1.20179 0.99981 0.96559 0.95425 1.23664 1.11286 1.00426 0.88480 1.83935 1.55923 1.34844 1.37301 1.19850 0.91121 0.88945 0.89616 1.19714 1.27589 1.12178 0.96490 0.90838 1.28379 0.98383 0.95186 0.98280 1.70596 1.13970 1.20867 1.40011 0.83029 0.74450 0.75734 0.73853 1.18926 1.18633 1.19233 1.21386 1.18735 1.07532 0.94640 0.90323 0.94103 0.92190 0.91920 0.94163 0.90338 0.92176 0.77691 0.90734 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.07 71.98 0.65 -2.92 15 2 C -0.03 -0.92 3.29 -11.54 -0.04 -0.96 15 3 C -0.13 -3.57 9.08 71.98 0.65 -2.92 15 4 C -0.12 -5.23 4.85 -20.09 -0.10 -5.33 15 5 C -0.18 -7.66 11.44 67.22 0.77 -6.89 15 6 O -0.22 -11.27 6.10 -9.70 -0.06 -11.33 15 7 C 0.16 8.70 6.45 22.95 0.15 8.85 15 8 C -0.53 -31.02 9.73 23.10 0.22 -30.79 15 9 H 0.07 4.46 8.06 -2.91 -0.02 4.43 15 10 C 0.01 0.73 5.52 85.31 0.47 1.20 15 11 N -0.83 -46.42 13.65 21.87 0.30 -46.12 15 12 Si 1.11 50.98 26.43 68.60 1.81 52.80 15 13 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 14 H -0.26 -12.00 6.34 99.48 0.63 -11.37 15 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 16 C -0.40 -20.90 10.88 22.96 0.25 -20.65 15 17 H 0.08 1.62 8.14 -2.38 -0.02 1.60 15 18 H 0.04 1.18 8.14 -2.39 -0.02 1.17 15 19 H 0.06 1.51 8.02 -2.39 -0.02 1.49 15 20 H 0.06 2.06 8.13 -2.39 -0.02 2.04 15 21 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.06 1.52 8.02 -2.39 -0.02 1.50 15 24 H 0.21 7.03 8.06 -2.91 -0.02 7.01 15 25 H 0.28 15.45 8.73 -92.71 -0.81 14.64 15 26 H 0.11 5.52 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -61.93 226.67 6.12 -55.82 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.03 Total: 9.25 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 3.03 Total: -60.40 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.30 Total: -46.12 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.06 Total: -11.33 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 1.81 Total: 52.80 kcal Total: -61.93 6.12 -55.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538441.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.850 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds