Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47021 * 2 1 4 4 C 1.50693 * 109.47327 * 239.99403 * 2 1 3 5 5 N 1.36104 * 126.81612 * 59.68966 * 4 2 1 6 6 H 0.97004 * 126.10483 * 359.97438 * 5 4 2 7 7 C 1.35960 * 107.78170 * 179.87723 * 5 4 2 8 8 N 1.30153 * 109.60117 * 0.39881 * 7 5 4 9 9 C 1.35980 * 109.12697 * 359.75313 * 8 7 5 10 10 C 1.41220 * 126.43734 * 180.02562 * 9 8 7 11 11 H 1.08008 * 119.99889 * 174.18561 * 10 9 8 12 12 C 1.39714 * 120.00300 * 354.17573 * 10 9 8 13 13 N 1.31020 * 119.99982 * 6.00698 * 12 10 9 14 14 Si 1.86804 * 120.00029 * 186.00047 * 12 10 9 15 15 H 1.48498 * 109.46693 * 94.98947 * 14 12 10 16 16 H 1.48502 * 109.47121 * 214.98538 * 14 12 10 17 17 H 1.48496 * 109.47313 * 334.98414 * 14 12 10 18 18 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.47071 * 60.00511 * 1 2 3 20 20 H 1.08993 * 109.47602 * 300.00213 * 1 2 3 21 21 H 1.09007 * 109.46366 * 119.99665 * 2 1 3 22 22 H 1.08997 * 109.47602 * 59.99484 * 3 2 1 23 23 H 1.08996 * 109.47100 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.47277 * 299.99108 * 3 2 1 25 25 H 1.08000 * 125.20402 * 180.15034 * 7 5 4 26 26 H 0.96999 * 119.99843 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 7 1.7858 -0.3721 -2.5254 6 1 1.2493 0.3772 -2.8282 7 6 2.4275 -1.2707 -3.3187 8 7 3.0455 -2.1442 -2.5777 9 6 2.8351 -1.8458 -1.2678 10 6 3.3377 -2.5549 -0.1548 11 1 3.1838 -2.1725 0.8435 12 6 4.0338 -3.7513 -0.3449 13 7 4.3230 -4.1553 -1.5573 14 14 4.5523 -4.7747 1.1293 15 1 3.5318 -5.8218 1.3884 16 1 5.8614 -5.4177 0.8497 17 1 4.6761 -3.8981 2.3215 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 0.5138 0.8899 21 1 1.8932 -0.5138 0.8901 22 1 1.6766 1.9563 0.8899 23 1 3.1299 1.4424 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 2.4218 -1.2634 -4.3986 26 1 4.8067 -4.9857 -1.6892 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075538503.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = 34.860964 kcal Electronic energy + Delta-G solvation = -10680.544590 eV Core-core repulsion = 8759.441544 eV Total energy + Delta-G solvation = -1921.103046 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.86058 -34.42574 -33.17267 -30.34329 -27.96630 -26.53434 -24.69042 -21.38256 -19.64558 -18.80584 -16.79319 -15.44700 -14.70553 -13.87873 -13.34819 -13.27086 -12.64595 -12.29175 -12.18126 -11.67546 -11.04316 -10.99546 -10.51779 -10.49314 -10.31145 -10.01493 -9.73957 -9.14129 -8.00695 -7.92069 -6.79707 -6.12311 -3.88106 3.19034 3.30733 3.34231 3.67462 4.28387 4.69902 4.76437 5.63744 5.71925 5.77472 6.02702 6.11756 6.12598 6.31256 6.31536 6.51840 6.75306 6.91516 6.95101 7.29733 7.59782 7.86179 8.08207 8.55447 9.01413 9.24599 9.44586 10.13843 10.82307 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.044975 B = 0.015259 C = 0.012331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.418030 B = 1834.556970 C = 2270.146317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 C -0.139 4.139 4 C -0.189 4.189 5 N -0.581 5.581 6 H 0.388 0.612 7 C 0.132 3.868 8 N -0.462 5.462 9 C 0.201 3.799 10 C -0.454 4.454 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.774 5.774 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.267 1.267 18 H 0.053 0.947 19 H 0.038 0.962 20 H 0.042 0.958 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.173 0.827 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 6.114 1.351 7.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.009 4.009 3 C -0.196 4.196 4 C -0.298 4.298 5 N -0.189 5.189 6 H 0.221 0.779 7 C -0.150 4.150 8 N -0.186 5.186 9 C 0.077 3.923 10 C -0.489 4.489 11 H 0.092 0.908 12 C -0.143 4.143 13 N -0.401 5.401 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.191 1.191 18 H 0.072 0.928 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.099 0.901 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.189 0.811 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.806 5.217 0.966 6.530 hybrid contribution -0.496 0.507 0.583 0.918 sum -4.302 5.724 1.549 7.326 Atomic orbital electron populations 1.21843 0.96982 1.01209 0.99576 1.19031 0.93125 0.93494 0.95209 1.21847 1.01265 0.96935 0.99587 1.20764 1.18269 1.07132 0.83662 1.42555 1.43567 1.26062 1.06760 0.77904 1.24861 1.00976 0.91845 0.97298 1.71219 1.21425 1.23103 1.02846 1.18292 0.93304 0.90357 0.90354 1.18446 1.33254 1.05234 0.91979 0.90819 1.25752 0.94819 0.97814 0.95879 1.70118 1.29873 1.19180 1.20910 0.86509 0.78154 0.80338 0.82726 1.20127 1.20754 1.19079 0.92767 0.94296 0.93886 0.90078 0.93895 0.92801 0.94275 0.81054 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.18 37.16 0.34 -2.00 15 2 C 0.01 0.22 3.30 -91.78 -0.30 -0.08 15 3 C -0.14 -2.34 9.17 37.15 0.34 -2.00 15 4 C -0.19 -4.48 5.89 -80.38 -0.47 -4.96 15 5 N -0.58 -12.16 6.12 -9.33 -0.06 -12.21 15 6 H 0.39 6.53 8.96 -40.82 -0.37 6.16 15 7 C 0.13 3.05 13.00 -89.82 -1.17 1.88 15 8 N -0.46 -13.19 9.53 -11.99 -0.11 -13.30 15 9 C 0.20 5.72 6.68 -84.58 -0.57 5.16 15 10 C -0.45 -13.09 9.11 -37.90 -0.35 -13.43 15 11 H 0.07 2.01 6.91 -52.48 -0.36 1.65 15 12 C 0.08 2.11 5.49 -17.35 -0.10 2.02 15 13 N -0.77 -22.82 11.97 55.54 0.66 -22.16 15 14 Si 0.90 20.57 29.56 -169.99 -5.03 15.54 15 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 18 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.08 1.70 6.95 -51.93 -0.36 1.34 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.17 3.20 8.06 -52.49 -0.42 2.78 15 26 H 0.26 7.17 8.30 -40.82 -0.34 6.84 15 LS Contribution 228.35 15.07 3.44 3.44 Total: -1.00 -32.26 228.35 -6.54 -38.81 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.18 Total: 3.29 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.27 Total: -13.41 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.49 Total: -47.67 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -32.26 -6.54 -38.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538503.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.666 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds