Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35986 * 126.48989 * 2 1 4 4 C 1.36165 * 107.04697 * 180.25805 * 3 2 1 5 5 N 1.32853 * 108.37116 * 359.77339 * 4 3 2 6 6 C 1.31996 * 109.23894 * 0.02562 * 5 4 3 7 7 C 1.47185 * 125.83644 * 179.97438 * 6 5 4 8 8 O 1.21943 * 119.99720 * 180.02562 * 7 6 5 9 9 C 1.41421 * 119.99878 * 0.29829 * 7 6 5 10 10 H 1.08002 * 120.00335 * 359.72196 * 9 7 6 11 11 C 1.40474 * 120.00055 * 179.72516 * 9 7 6 12 12 N 1.30464 * 119.99865 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 120.00255 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47052 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47156 * 120.00045 * 13 11 9 16 16 H 1.48506 * 109.47091 * 240.00236 * 13 11 9 17 17 H 1.08999 * 109.46969 * 270.11837 * 1 2 3 18 18 H 1.08994 * 109.47439 * 30.12112 * 1 2 3 19 19 H 1.09003 * 109.46936 * 150.12019 * 1 2 3 20 20 H 1.08008 * 126.47557 * 0.02562 * 3 2 1 21 21 H 1.07996 * 125.81770 * 179.73870 * 4 3 2 22 22 H 0.97004 * 120.00107 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2737 1.0933 0.0000 4 6 3.5577 0.6400 -0.0059 5 7 3.5328 -0.6883 -0.0043 6 6 2.2787 -1.0998 0.0017 7 6 1.8320 -2.5022 0.0047 8 8 0.6407 -2.7626 0.0099 9 6 2.7843 -3.5477 0.0073 10 1 3.8394 -3.3171 0.0026 11 6 2.3580 -4.8861 0.0160 12 7 1.0835 -5.1648 0.0211 13 14 3.6160 -6.2671 0.0187 14 1 4.9843 -5.6903 0.0101 15 1 3.4362 -7.0980 1.2363 16 1 3.4274 -7.1109 -1.1887 17 1 -0.3633 0.0021 1.0277 18 1 -0.3634 0.8888 -0.5157 19 1 -0.3633 -0.8911 -0.5120 20 1 1.9573 2.1260 0.0004 21 1 4.4451 1.2554 -0.0114 22 1 0.7891 -6.0890 0.0274 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079106052.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = 15.992245 kcal Electronic energy + Delta-G solvation = -10367.346541 eV Core-core repulsion = 8309.592191 eV Total energy + Delta-G solvation = -2057.754349 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.01303 -36.39512 -33.31563 -32.61620 -29.02343 -26.81154 -26.20978 -22.18506 -20.47601 -18.93284 -16.67857 -15.92153 -14.98247 -14.92351 -13.73236 -13.55636 -12.70237 -12.69516 -12.39882 -11.87157 -11.67327 -11.38804 -10.98841 -10.40063 -10.30314 -9.11376 -9.02917 -8.88103 -7.67738 -7.53227 -6.41658 -4.94020 2.54056 3.06941 3.15253 3.23221 3.58903 3.69434 4.03769 4.50947 5.36062 5.48073 5.65732 5.68164 5.84113 6.15059 6.18611 6.33573 7.06349 7.21664 7.49639 7.98003 8.21478 8.65044 8.76689 9.00346 10.20585 10.41743 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.066175 B = 0.013668 C = 0.011398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.018696 B = 2048.121484 C = 2455.992671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.441 5.441 3 C -0.090 4.090 4 C -0.041 4.041 5 N -0.470 5.470 6 C 0.187 3.813 7 C 0.418 3.582 8 O -0.550 6.550 9 C -0.479 4.479 10 H 0.088 0.912 11 C 0.076 3.924 12 N -0.732 5.732 13 Si 0.915 3.085 14 H -0.256 1.256 15 H -0.273 1.273 16 H -0.273 1.273 17 H 0.068 0.932 18 H 0.068 0.932 19 H 0.109 0.891 20 H 0.163 0.837 21 H 0.161 0.839 22 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 5.839 -0.118 5.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.122 5.122 3 C -0.226 4.226 4 C -0.194 4.194 5 N -0.190 5.190 6 C -0.073 4.073 7 C 0.314 3.686 8 O -0.440 6.440 9 C -0.511 4.511 10 H 0.106 0.894 11 C -0.148 4.148 12 N -0.361 5.361 13 Si 0.738 3.262 14 H -0.179 1.179 15 H -0.198 1.198 16 H -0.198 1.198 17 H 0.087 0.913 18 H 0.087 0.913 19 H 0.128 0.872 20 H 0.181 0.819 21 H 0.178 0.822 22 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.283 5.113 -0.120 5.123 hybrid contribution -0.038 0.306 0.038 0.311 sum 0.245 5.420 -0.082 5.426 Atomic orbital electron populations 1.22114 0.76588 1.04560 1.03282 1.45548 1.07756 1.06716 1.52146 1.22810 0.92062 0.92410 1.15274 1.22374 0.95522 0.92210 1.09298 1.70352 1.19357 1.10658 1.18593 1.25960 0.84592 0.92831 1.03911 1.17172 0.89623 0.81253 0.80511 1.90524 1.18377 1.83273 1.51789 1.20834 0.95915 0.90140 1.44215 0.89414 1.26114 0.95721 1.00341 0.92642 1.69948 1.15627 1.20429 1.30075 0.86170 0.81669 0.79903 0.78444 1.17935 1.19791 1.19792 0.91315 0.91340 0.87249 0.81932 0.82205 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 10.64 59.85 0.64 2.03 14 2 N -0.44 -9.59 3.18 -121.57 -0.39 -9.97 14 3 C -0.09 -1.67 11.59 -16.46 -0.19 -1.86 14 4 C -0.04 -0.83 11.86 -17.86 -0.21 -1.04 14 5 N -0.47 -11.71 10.86 -11.13 -0.12 -11.83 14 6 C 0.19 4.87 7.70 -154.16 -1.19 3.68 14 7 C 0.42 12.23 6.91 -34.74 -0.24 11.99 14 8 O -0.55 -16.92 13.23 4.97 0.07 -16.86 14 9 C -0.48 -13.78 9.11 -37.53 -0.34 -14.13 14 10 H 0.09 2.46 7.64 -52.49 -0.40 2.06 14 11 C 0.08 2.05 5.50 -17.29 -0.10 1.95 14 12 N -0.73 -20.72 11.72 55.57 0.65 -20.07 14 13 Si 0.91 19.61 29.56 -169.99 -5.03 14.59 14 14 H -0.26 -5.43 7.11 56.52 0.40 -5.03 14 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 14 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 14 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 14 18 H 0.07 0.94 8.14 -51.93 -0.42 0.52 14 19 H 0.11 2.26 6.35 -51.93 -0.33 1.93 14 20 H 0.16 2.26 8.06 -52.48 -0.42 1.83 14 21 H 0.16 2.58 8.06 -52.49 -0.42 2.16 14 22 H 0.28 6.92 8.29 -40.82 -0.34 6.58 14 LS Contribution 207.88 15.07 3.13 3.13 Total: -1.00 -33.25 207.88 -4.87 -38.12 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -1.56 Total: 0.27 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.63 Total: 2.62 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.14 Total: -41.87 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.07 Total: -16.86 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -33.25 -4.87 -38.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079106052.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.107 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds