Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35986 * 126.48989 * 2 1 4 4 C 1.36165 * 107.04697 * 180.25805 * 3 2 1 5 5 N 1.32853 * 108.37116 * 359.77339 * 4 3 2 6 6 C 1.31996 * 109.23894 * 0.02562 * 5 4 3 7 7 C 1.47185 * 125.83644 * 179.97438 * 6 5 4 8 8 O 1.21943 * 119.99720 * 180.02562 * 7 6 5 9 9 C 1.41421 * 119.99878 * 0.29829 * 7 6 5 10 10 H 1.08002 * 120.00335 * 359.72196 * 9 7 6 11 11 C 1.40474 * 120.00055 * 179.72516 * 9 7 6 12 12 N 1.30464 * 119.99865 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 120.00255 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47052 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47156 * 120.00045 * 13 11 9 16 16 H 1.48506 * 109.47091 * 240.00236 * 13 11 9 17 17 H 1.08999 * 109.46969 * 270.11837 * 1 2 3 18 18 H 1.08994 * 109.47439 * 30.12112 * 1 2 3 19 19 H 1.09003 * 109.46936 * 150.12019 * 1 2 3 20 20 H 1.08008 * 126.47557 * 0.02562 * 3 2 1 21 21 H 1.07996 * 125.81770 * 179.73870 * 4 3 2 22 22 H 0.97004 * 120.00107 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2737 1.0933 0.0000 4 6 3.5577 0.6400 -0.0059 5 7 3.5328 -0.6883 -0.0043 6 6 2.2787 -1.0998 0.0017 7 6 1.8320 -2.5022 0.0047 8 8 0.6407 -2.7626 0.0099 9 6 2.7843 -3.5477 0.0073 10 1 3.8394 -3.3171 0.0026 11 6 2.3580 -4.8861 0.0160 12 7 1.0835 -5.1648 0.0211 13 14 3.6160 -6.2671 0.0187 14 1 4.9843 -5.6903 0.0101 15 1 3.4362 -7.0980 1.2363 16 1 3.4274 -7.1109 -1.1887 17 1 -0.3633 0.0021 1.0277 18 1 -0.3634 0.8888 -0.5157 19 1 -0.3633 -0.8911 -0.5120 20 1 1.9573 2.1260 0.0004 21 1 4.4451 1.2554 -0.0114 22 1 0.7891 -6.0890 0.0274 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079106052.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -7.359366 kcal Electronic energy + Delta-G solvation = -10368.359143 eV Core-core repulsion = 8309.592191 eV Total energy + Delta-G solvation = -2058.766951 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.70174 -38.53278 -35.09744 -34.58877 -30.83436 -28.76296 -27.83119 -24.11392 -22.08764 -20.79635 -18.58086 -17.87913 -16.80030 -16.57208 -15.41742 -15.37938 -14.59054 -14.19972 -14.16794 -13.54655 -13.37194 -13.32192 -12.73919 -12.53233 -12.01365 -11.02976 -10.85840 -10.57882 -9.81585 -9.20099 -8.45820 -7.13587 0.76911 1.38816 1.39584 1.58065 1.97561 2.01044 2.24789 2.54580 3.58660 3.91648 4.03752 4.10299 4.38399 4.58487 4.67911 4.79541 5.15753 5.45340 5.92939 6.03040 6.28215 6.59682 6.64856 7.25780 8.10439 8.38374 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.066175 B = 0.013668 C = 0.011398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.018696 B = 2048.121484 C = 2455.992671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.441 5.441 3 C -0.052 4.052 4 C -0.063 4.063 5 N -0.493 5.493 6 C 0.125 3.875 7 C 0.399 3.601 8 O -0.584 6.584 9 C -0.514 4.514 10 H 0.083 0.917 11 C 0.027 3.973 12 N -0.775 5.775 13 Si 1.000 3.000 14 H -0.254 1.254 15 H -0.258 1.258 16 H -0.258 1.258 17 H 0.078 0.922 18 H 0.121 0.879 19 H 0.074 0.926 20 H 0.224 0.776 21 H 0.200 0.800 22 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 7.162 -0.117 7.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.121 5.121 3 C -0.189 4.189 4 C -0.215 4.215 5 N -0.215 5.215 6 C -0.133 4.133 7 C 0.299 3.701 8 O -0.477 6.477 9 C -0.546 4.546 10 H 0.101 0.899 11 C -0.193 4.193 12 N -0.404 5.404 13 Si 0.818 3.182 14 H -0.177 1.177 15 H -0.182 1.182 16 H -0.182 1.182 17 H 0.096 0.904 18 H 0.139 0.861 19 H 0.093 0.907 20 H 0.240 0.760 21 H 0.217 0.783 22 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.047 6.436 -0.119 6.522 hybrid contribution -0.303 0.104 0.036 0.323 sum 0.744 6.540 -0.082 6.582 Atomic orbital electron populations 1.22260 0.74810 1.05408 1.04201 1.45777 1.09065 1.06515 1.50727 1.23761 0.90965 0.93778 1.10364 1.23148 0.98055 0.90765 1.09564 1.70218 1.19335 1.13575 1.18324 1.25092 0.85946 0.92797 1.09510 1.17539 0.89378 0.83469 0.79752 1.90467 1.19237 1.84690 1.53318 1.21165 0.95804 0.91770 1.45826 0.89854 1.27257 0.98148 1.02746 0.91194 1.70020 1.18008 1.21981 1.30366 0.84937 0.78059 0.75784 0.79441 1.17729 1.18191 1.18188 0.90369 0.86079 0.90719 0.75998 0.78349 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.58 10.64 127.77 1.36 3.94 14 2 N -0.44 -18.50 3.18 -538.52 -1.71 -20.21 14 3 C -0.05 -1.72 11.59 83.57 0.97 -0.75 14 4 C -0.06 -2.36 11.86 84.06 1.00 -1.37 14 5 N -0.49 -24.58 10.86 -189.11 -2.05 -26.63 14 6 C 0.12 6.61 7.70 136.05 1.05 7.66 14 7 C 0.40 24.47 6.91 25.41 0.18 24.64 14 8 O -0.58 -37.82 13.23 -5.13 -0.07 -37.89 14 9 C -0.51 -30.82 9.11 23.60 0.22 -30.60 14 10 H 0.08 4.88 7.64 -2.91 -0.02 4.86 14 11 C 0.03 1.47 5.50 85.44 0.47 1.94 14 12 N -0.77 -45.19 11.72 21.91 0.26 -44.93 14 13 Si 1.00 40.61 29.56 68.60 2.03 42.64 14 14 H -0.25 -10.10 7.11 99.48 0.71 -9.40 14 15 H -0.26 -9.77 7.11 99.48 0.71 -9.07 14 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 14 17 H 0.08 2.54 8.14 -2.39 -0.02 2.52 14 18 H 0.12 2.86 8.14 -2.39 -0.02 2.84 14 19 H 0.07 3.15 6.35 -2.39 -0.02 3.14 14 20 H 0.22 4.57 8.06 -2.91 -0.02 4.54 14 21 H 0.20 5.63 8.06 -2.91 -0.02 5.60 14 22 H 0.29 14.72 8.29 -92.71 -0.77 13.95 14 Total: -1.00 -76.53 207.88 4.92 -71.62 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.23 Total: 9.94 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.23 Total: 5.46 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -3.51 Total: -91.77 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.07 Total: -37.89 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -76.53 4.92 -71.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079106052.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.260 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds