Wall clock time and date at job start Mon Mar 30 2020 02:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46492 * 126.04227 * 359.94220 * 6 2 1 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 2 9 9 C 1.50697 * 109.47706 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99325 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00351 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00233 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46899 * 89.99801 * 13 11 9 15 15 H 1.48498 * 109.47321 * 209.99825 * 13 11 9 16 16 H 1.48495 * 109.47035 * 330.00209 * 13 11 9 17 17 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 20 20 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 21 21 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 22 22 H 1.09001 * 109.47504 * 210.00369 * 7 6 2 23 23 H 1.09010 * 109.47188 * 330.00050 * 7 6 2 24 24 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 25 25 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 26 26 H 0.97002 * 120.00269 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4845 -0.0125 8 6 1.6965 -2.9630 -1.4572 9 6 1.2344 -4.3974 -1.4639 10 1 1.0690 -4.9157 -0.5309 11 6 1.0226 -5.0479 -2.6609 12 7 1.2234 -4.4165 -3.7969 13 14 0.4504 -6.8261 -2.6692 14 1 -1.0340 -6.8684 -2.6686 15 1 0.9645 -7.5059 -3.8852 16 1 0.9658 -7.5175 -1.4602 17 1 -0.3633 -0.0056 1.0277 18 1 -0.3633 -0.8872 -0.5187 19 1 -0.3633 0.8928 -0.5090 20 1 1.9741 2.1211 0.0007 21 1 4.5084 1.2891 0.0050 22 1 2.5902 -3.1055 0.4978 23 1 0.8958 -2.5604 0.5018 24 1 0.9602 -2.3420 -1.9674 25 1 2.6546 -2.8872 -1.9714 26 1 1.0748 -4.8742 -4.6391 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079986074.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:08 Heat of formation + Delta-G solvation = 37.565864 kcal Electronic energy + Delta-G solvation = -10355.653025 eV Core-core repulsion = 8434.667272 eV Total energy + Delta-G solvation = -1920.985752 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.04021 -36.21348 -34.26531 -32.97415 -30.67325 -27.77568 -26.80975 -23.59904 -21.88189 -20.45332 -18.67883 -17.26646 -16.68131 -15.89843 -15.69296 -14.86543 -14.32594 -14.18873 -13.83316 -13.67000 -13.30904 -12.87127 -12.81340 -12.59149 -12.10620 -11.91916 -11.48003 -11.41950 -10.64465 -10.10479 -9.34995 -8.27462 -6.42083 1.05275 1.40360 1.42523 1.53743 1.75458 2.00697 2.38808 3.06831 3.78362 3.89172 4.26026 4.40753 4.44148 4.63429 4.74982 4.85743 4.89367 5.04089 5.30653 5.35953 5.41681 5.66448 5.87381 6.02011 6.28520 6.73857 6.91511 7.29001 8.85058 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.072889 B = 0.009568 C = 0.009247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.055997 B = 2925.651076 C = 3027.274376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.069 3.931 3 C -0.292 4.292 4 C 0.034 3.966 5 N -0.353 5.353 6 N -0.374 5.374 7 C 0.144 3.856 8 C 0.026 3.974 9 C -0.546 4.546 10 H 0.074 0.926 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.260 1.260 17 H 0.100 0.900 18 H 0.059 0.941 19 H 0.105 0.895 20 H 0.174 0.826 21 H 0.211 0.789 22 H 0.079 0.921 23 H 0.105 0.895 24 H -0.002 1.002 25 H -0.020 1.020 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 7.803 7.734 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 C -0.321 4.321 4 C -0.151 4.151 5 N -0.175 5.175 6 N -0.157 5.157 7 C 0.023 3.977 8 C -0.012 4.012 9 C -0.584 4.584 10 H 0.092 0.908 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.799 3.201 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.184 1.184 17 H 0.118 0.882 18 H 0.078 0.922 19 H 0.123 0.877 20 H 0.192 0.808 21 H 0.228 0.772 22 H 0.098 0.902 23 H 0.124 0.876 24 H 0.016 0.984 25 H -0.001 1.001 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.707 6.580 7.561 10.167 hybrid contribution -0.410 -0.148 -0.560 0.709 sum -2.117 6.432 7.001 9.740 Atomic orbital electron populations 1.20567 0.85431 1.04401 1.04454 1.21893 0.96507 0.87357 1.00164 1.21575 0.91825 0.99761 1.18928 1.24402 0.99687 0.91706 0.99264 1.77274 0.98779 1.14850 1.26619 1.49082 1.03659 1.07044 1.55912 1.21852 1.00229 0.76096 0.99510 1.19211 0.94896 0.96053 0.91014 1.21479 1.46061 0.97330 0.93520 0.90765 1.26052 0.95119 1.03566 0.94939 1.70130 1.49602 1.39342 0.98256 0.85294 0.78801 0.78065 0.77967 1.19202 1.21062 1.18364 0.88172 0.92236 0.87684 0.80825 0.77221 0.90212 0.87648 0.98405 1.00119 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 9.90 71.24 0.71 -1.66 15 2 C 0.07 2.38 6.93 41.41 0.29 2.67 15 3 C -0.29 -8.89 10.72 21.99 0.24 -8.65 15 4 C 0.03 1.12 12.03 85.24 1.02 2.14 15 5 N -0.35 -14.86 12.58 -57.03 -0.72 -15.58 15 6 N -0.37 -15.56 3.61 -334.70 -1.21 -16.77 15 7 C 0.14 6.20 6.00 86.38 0.52 6.72 15 8 C 0.03 1.42 5.30 29.85 0.16 1.58 15 9 C -0.55 -30.44 9.11 25.60 0.23 -30.21 15 10 H 0.07 3.83 7.74 -2.91 -0.02 3.81 15 11 C 0.00 0.09 5.46 84.65 0.46 0.56 15 12 N -0.93 -57.18 13.29 21.45 0.28 -56.89 15 13 Si 0.98 43.34 29.54 68.60 2.03 45.36 15 14 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 16 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 17 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 18 H 0.06 1.80 7.72 -2.39 -0.02 1.78 15 19 H 0.10 2.19 8.14 -2.38 -0.02 2.17 15 20 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 21 H 0.21 4.99 8.06 -2.91 -0.02 4.96 15 22 H 0.08 3.43 8.14 -2.39 -0.02 3.41 15 23 H 0.11 3.95 7.66 -2.38 -0.02 3.93 15 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 15 25 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 15 26 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 Total: -1.00 -69.47 234.03 5.16 -64.31 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.15 Total: 6.42 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 3.62 Total: -26.86 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.64 Total: -89.24 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -69.47 5.16 -64.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079986074.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.874 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds