Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47026 * 2 1 4 4 N 1.35894 * 126.31423 * 265.02073 * 3 2 1 5 5 H 0.97000 * 124.85862 * 359.93121 * 4 3 2 6 6 N 1.28477 * 110.28338 * 179.97438 * 4 3 2 7 7 C 1.32752 * 109.92951 * 0.02562 * 6 4 3 8 8 C 1.41427 * 126.56767 * 180.02562 * 7 6 4 9 9 H 1.07999 * 120.00106 * 174.29743 * 8 7 6 10 10 C 1.39846 * 119.99977 * 354.29809 * 8 7 6 11 11 N 1.30896 * 120.00102 * 5.99946 * 10 8 7 12 12 Si 1.86803 * 120.00107 * 185.99835 * 10 8 7 13 13 H 1.48504 * 109.46783 * 94.98224 * 12 10 8 14 14 H 1.48496 * 109.47172 * 214.97853 * 12 10 8 15 15 H 1.48494 * 109.46764 * 334.98260 * 12 10 8 16 16 C 1.35078 * 126.31132 * 84.71152 * 3 2 1 17 17 C 1.50702 * 127.22413 * 0.02562 * 16 3 2 18 18 H 1.09001 * 109.47062 * 300.00316 * 1 2 3 19 19 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46967 * 60.00010 * 1 2 3 21 21 H 1.08998 * 109.46967 * 119.99990 * 2 1 3 22 22 H 1.09001 * 109.47325 * 240.00167 * 2 1 3 23 23 H 0.97003 * 120.00325 * 179.97438 * 11 10 8 24 24 H 1.08998 * 109.47037 * 89.99984 * 17 16 3 25 25 H 1.09003 * 109.46798 * 209.99713 * 17 16 3 26 26 H 1.09005 * 109.46715 * 329.99574 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3902 2.1479 -1.0909 5 1 2.3619 1.8259 -2.0054 6 7 2.7722 3.3225 -0.7375 7 6 2.6941 3.4459 0.5820 8 6 3.0276 4.5907 1.3424 9 1 2.8366 4.6075 2.4053 10 6 3.6046 5.7011 0.7181 11 7 3.7284 5.7286 -0.5847 12 14 4.1986 7.1453 1.7434 13 1 5.6494 6.9917 2.0209 14 1 3.9682 8.4091 0.9986 15 1 3.4506 7.1828 3.0256 16 6 2.2044 2.2084 1.0838 17 6 1.9369 1.8499 2.5230 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 4.1283 6.4990 -1.0178 24 1 2.8373 1.4228 2.9644 25 1 1.6524 2.7464 3.0738 26 1 1.1275 1.1214 2.5715 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408553.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = 47.296521 kcal Electronic energy + Delta-G solvation = -10604.263441 eV Core-core repulsion = 8683.699641 eV Total energy + Delta-G solvation = -1920.563800 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.37283 -33.67662 -33.07592 -31.16975 -28.43648 -25.87951 -25.24349 -22.56910 -19.95793 -18.12571 -16.15393 -16.04340 -14.53212 -14.02386 -13.74366 -13.06300 -12.55826 -11.97370 -11.77689 -11.66561 -11.44354 -11.16669 -11.03775 -10.72816 -10.43242 -10.25550 -9.62806 -9.10834 -8.24274 -7.36044 -7.04232 -6.18385 -4.02782 3.21694 3.30151 3.34186 3.55151 4.27752 4.50099 4.68472 5.47148 5.50862 5.76481 5.80653 6.11265 6.20361 6.24197 6.39610 6.56974 6.60948 6.70562 6.91807 7.35611 7.57525 7.63378 7.96182 8.53629 8.95683 9.13624 9.41194 10.41052 10.80520 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.072844 B = 0.012350 C = 0.010942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.291901 B = 2266.580274 C = 2558.353972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.018 4.018 4 N -0.439 5.439 5 H 0.414 0.586 6 N -0.330 5.330 7 C 0.195 3.805 8 C -0.449 4.449 9 H 0.077 0.923 10 C 0.072 3.928 11 N -0.786 5.786 12 Si 0.901 3.099 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.258 4.258 17 C -0.049 4.049 18 H 0.058 0.942 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.266 0.734 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -7.061 1.602 7.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.145 4.145 4 N -0.145 5.145 5 H 0.253 0.747 6 N -0.162 5.162 7 C 0.045 3.955 8 C -0.488 4.488 9 H 0.095 0.905 10 C -0.145 4.145 11 N -0.415 5.415 12 Si 0.727 3.273 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.190 1.190 16 C -0.271 4.271 17 C -0.107 4.107 18 H 0.077 0.923 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.873 -6.363 0.426 6.994 hybrid contribution 0.128 0.154 0.606 0.638 sum -2.745 -6.209 1.032 6.866 Atomic orbital electron populations 1.21729 0.95656 1.00410 1.02267 1.19847 0.95217 0.91610 1.01575 1.20778 1.09455 0.94934 0.89320 1.43458 1.53153 1.11001 1.06912 0.74699 1.74689 1.27838 0.98397 1.15297 1.19199 0.95568 0.92378 0.88307 1.18499 1.38832 0.96814 0.94699 0.90487 1.25730 0.95088 0.98931 0.94776 1.69989 1.34234 1.28394 1.08866 0.86429 0.79401 0.80858 0.80589 1.20126 1.20811 1.19015 1.20009 1.16403 0.96640 0.94089 1.19726 0.98646 0.99588 0.92740 0.92304 0.93263 0.93182 0.91012 0.92571 0.92396 0.94065 0.92753 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 37.16 0.37 -1.68 15 2 C -0.04 -0.70 6.14 -27.88 -0.17 -0.87 15 3 C -0.02 -0.39 6.49 -81.92 -0.53 -0.92 15 4 N -0.44 -10.36 6.86 33.59 0.23 -10.13 15 5 H 0.41 8.13 8.96 -190.43 -1.71 6.42 15 6 N -0.33 -9.50 10.52 32.34 0.34 -9.16 15 7 C 0.20 5.67 6.78 -84.72 -0.57 5.09 15 8 C -0.45 -13.09 9.22 -37.77 -0.35 -13.44 15 9 H 0.08 2.12 7.50 -52.49 -0.39 1.73 15 10 C 0.07 2.03 5.49 -17.35 -0.10 1.93 15 11 N -0.79 -23.21 12.00 55.54 0.67 -22.54 15 12 Si 0.90 20.66 29.56 -169.99 -5.03 15.64 15 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 15 H -0.27 -5.93 7.11 56.52 0.40 -5.52 15 16 C -0.26 -6.37 6.26 -104.21 -0.65 -7.02 15 17 C -0.05 -1.00 10.03 36.01 0.36 -0.64 15 18 H 0.06 0.89 7.87 -51.93 -0.41 0.48 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.07 1.09 8.09 -51.93 -0.42 0.67 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.27 7.22 8.30 -40.82 -0.34 6.88 15 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.05 1.11 7.75 -51.93 -0.40 0.71 15 26 H 0.04 0.67 7.71 -51.93 -0.40 0.27 15 LS Contribution 229.32 15.07 3.46 3.46 Total: -1.00 -32.71 229.32 -6.53 -39.25 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.56 Total: 1.04 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.64 Total: -17.55 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.24 Total: -41.84 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.71 -6.53 -39.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408553.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.545 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds