Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47026 * 2 1 4 4 N 1.35894 * 126.31423 * 265.02073 * 3 2 1 5 5 H 0.97000 * 124.85862 * 359.93121 * 4 3 2 6 6 N 1.28477 * 110.28338 * 179.97438 * 4 3 2 7 7 C 1.32752 * 109.92951 * 0.02562 * 6 4 3 8 8 C 1.41427 * 126.56767 * 180.02562 * 7 6 4 9 9 H 1.07999 * 120.00106 * 174.29743 * 8 7 6 10 10 C 1.39846 * 119.99977 * 354.29809 * 8 7 6 11 11 N 1.30896 * 120.00102 * 5.99946 * 10 8 7 12 12 Si 1.86803 * 120.00107 * 185.99835 * 10 8 7 13 13 H 1.48504 * 109.46783 * 94.98224 * 12 10 8 14 14 H 1.48496 * 109.47172 * 214.97853 * 12 10 8 15 15 H 1.48494 * 109.46764 * 334.98260 * 12 10 8 16 16 C 1.35078 * 126.31132 * 84.71152 * 3 2 1 17 17 C 1.50702 * 127.22413 * 0.02562 * 16 3 2 18 18 H 1.09001 * 109.47062 * 300.00316 * 1 2 3 19 19 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46967 * 60.00010 * 1 2 3 21 21 H 1.08998 * 109.46967 * 119.99990 * 2 1 3 22 22 H 1.09001 * 109.47325 * 240.00167 * 2 1 3 23 23 H 0.97003 * 120.00325 * 179.97438 * 11 10 8 24 24 H 1.08998 * 109.47037 * 89.99984 * 17 16 3 25 25 H 1.09003 * 109.46798 * 209.99713 * 17 16 3 26 26 H 1.09005 * 109.46715 * 329.99574 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3902 2.1479 -1.0909 5 1 2.3619 1.8259 -2.0054 6 7 2.7722 3.3225 -0.7375 7 6 2.6941 3.4459 0.5820 8 6 3.0276 4.5907 1.3424 9 1 2.8366 4.6075 2.4053 10 6 3.6046 5.7011 0.7181 11 7 3.7284 5.7286 -0.5847 12 14 4.1986 7.1453 1.7434 13 1 5.6494 6.9917 2.0209 14 1 3.9682 8.4091 0.9986 15 1 3.4506 7.1828 3.0256 16 6 2.2044 2.2084 1.0838 17 6 1.9369 1.8499 2.5230 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 4.1283 6.4990 -1.0178 24 1 2.8373 1.4228 2.9644 25 1 1.6524 2.7464 3.0738 26 1 1.1275 1.1214 2.5715 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408553.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = 25.008162 kcal Electronic energy + Delta-G solvation = -10605.229937 eV Core-core repulsion = 8683.699641 eV Total energy + Delta-G solvation = -1921.530295 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.27734 -35.46771 -34.81531 -32.98670 -30.23321 -27.73144 -27.14002 -23.98093 -21.95508 -19.95532 -18.20245 -17.82304 -16.43001 -15.69008 -15.17392 -14.84855 -14.27658 -13.48985 -13.32173 -13.25831 -13.04539 -12.87257 -12.77484 -12.35018 -12.08733 -11.90717 -11.43579 -11.14460 -10.23393 -9.40838 -8.88308 -8.26332 -6.18641 1.41277 1.42708 1.57469 1.78521 2.35472 2.43254 2.99085 3.65334 4.12938 4.27924 4.55936 4.68264 4.80969 4.88068 5.07414 5.08771 5.11640 5.24747 5.42715 5.44349 5.60813 5.85076 6.03627 6.47114 7.02993 7.10171 7.36077 8.40879 8.74623 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.072844 B = 0.012350 C = 0.010942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.291901 B = 2266.580274 C = 2558.353972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 C 0.004 3.996 4 N -0.441 5.441 5 H 0.429 0.571 6 N -0.376 5.376 7 C 0.153 3.847 8 C -0.484 4.484 9 H 0.080 0.920 10 C 0.019 3.981 11 N -0.829 5.829 12 Si 0.983 3.017 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.256 1.256 16 C -0.292 4.292 17 C -0.042 4.042 18 H 0.047 0.953 19 H 0.086 0.914 20 H 0.041 0.959 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.269 0.731 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -8.320 2.409 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C -0.124 4.124 4 N -0.148 5.148 5 H 0.270 0.730 6 N -0.208 5.208 7 C 0.002 3.998 8 C -0.523 4.523 9 H 0.098 0.902 10 C -0.194 4.194 11 N -0.459 5.459 12 Si 0.805 3.195 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.179 1.179 16 C -0.304 4.304 17 C -0.100 4.100 18 H 0.067 0.933 19 H 0.104 0.896 20 H 0.060 0.940 21 H 0.107 0.893 22 H 0.099 0.901 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.328 -7.647 1.229 8.430 hybrid contribution 0.215 0.407 0.289 0.543 sum -3.113 -7.241 1.518 8.027 Atomic orbital electron populations 1.21689 0.93933 1.02569 1.01381 1.20057 0.96488 0.87748 1.03705 1.21575 1.06208 0.96901 0.87670 1.43487 1.52780 1.10250 1.08331 0.72996 1.74540 1.29373 1.01000 1.15934 1.19722 0.96809 0.94287 0.88996 1.18897 1.40199 0.98098 0.95129 0.90229 1.26716 0.94722 1.01909 0.96023 1.70126 1.35355 1.29574 1.10835 0.85190 0.78881 0.76598 0.78862 1.19377 1.20038 1.17916 1.20547 1.17225 0.95755 0.96876 1.19730 1.00181 0.99975 0.90136 0.93349 0.89567 0.94004 0.89255 0.90070 0.92117 0.93094 0.93830 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.89 71.98 0.71 -2.73 15 2 C -0.04 -1.18 6.14 29.85 0.18 -0.99 15 3 C 0.00 0.17 6.49 41.20 0.27 0.44 15 4 N -0.44 -20.76 6.86 -47.63 -0.33 -21.09 15 5 H 0.43 16.65 8.96 -219.99 -1.97 14.68 15 6 N -0.38 -22.20 10.52 -51.60 -0.54 -22.74 15 7 C 0.15 9.07 6.78 40.78 0.28 9.35 15 8 C -0.48 -29.01 9.22 23.45 0.22 -28.79 15 9 H 0.08 4.50 7.50 -2.91 -0.02 4.48 15 10 C 0.02 1.11 5.49 85.22 0.47 1.58 15 11 N -0.83 -50.40 12.00 21.81 0.26 -50.13 15 12 Si 0.98 43.12 29.56 68.60 2.03 45.15 15 13 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 14 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 15 H -0.26 -10.63 7.11 99.48 0.71 -9.93 15 16 C -0.29 -14.31 6.26 -19.60 -0.12 -14.43 15 17 C -0.04 -1.67 10.03 71.24 0.71 -0.95 15 18 H 0.05 1.31 7.87 -2.39 -0.02 1.29 15 19 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.04 1.10 8.14 -2.39 -0.02 1.09 15 21 H 0.09 2.32 8.09 -2.39 -0.02 2.30 15 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.27 15.03 8.30 -92.71 -0.77 14.26 15 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 25 H 0.04 1.76 7.75 -2.39 -0.02 1.75 15 26 H 0.07 2.25 7.71 -2.38 -0.02 2.24 15 Total: -1.00 -72.79 229.32 3.34 -69.45 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.79 Total: 15.90 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 2.72 Total: -36.53 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -0.61 Total: -93.97 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.79 3.34 -69.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408553.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.456 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds