Wall clock time and date at job start Mon Mar 30 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.35068 * 126.31044 * 215.00227 * 4 2 1 6 6 C 1.42230 * 105.54848 * 179.97438 * 5 4 2 7 7 C 1.41424 * 126.56909 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99918 * 0.02562 * 7 6 5 9 9 C 1.39858 * 119.99975 * 179.97438 * 7 6 5 10 10 N 1.30885 * 120.00050 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99966 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46838 * 60.00475 * 11 9 7 13 13 H 1.48501 * 109.47050 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47517 * 300.00609 * 11 9 7 15 15 N 1.32759 * 106.86485 * 359.97438 * 6 5 4 16 16 N 1.28477 * 109.92774 * 359.71783 * 15 6 5 17 17 H 0.97003 * 124.86475 * 180.28651 * 16 15 6 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.08000 * 127.22941 * 359.97438 * 5 4 2 26 26 H 0.97005 * 120.00349 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 3.1395 -1.4794 -1.3141 6 6 3.1932 -1.9251 -2.6637 7 6 4.1797 -2.7611 -3.2365 8 1 4.9963 -3.1257 -2.6310 9 6 4.0973 -3.1163 -4.5867 10 7 3.1075 -2.6747 -5.3203 11 14 5.4008 -4.2199 -5.3433 12 1 5.4213 -5.5223 -4.6303 13 1 5.0872 -4.4449 -6.7773 14 1 6.7303 -3.5693 -5.2240 15 7 2.1397 -1.4061 -3.2829 16 7 1.4509 -0.7011 -2.4588 17 1 0.6344 -0.2274 -2.6821 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 3.8376 -1.7080 -0.5224 26 1 3.0505 -2.9208 -6.2569 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408556.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:47 Heat of formation + Delta-G solvation = 49.352353 kcal Electronic energy + Delta-G solvation = -10502.672734 eV Core-core repulsion = 8582.198082 eV Total energy + Delta-G solvation = -1920.474652 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.36633 -34.96928 -33.07509 -29.96474 -27.95641 -26.88832 -25.35767 -21.74126 -19.63943 -19.25645 -16.16134 -15.90656 -14.65304 -14.24929 -13.59232 -13.27629 -12.60590 -12.52208 -12.00391 -11.93961 -11.28089 -11.01809 -10.85850 -10.68549 -10.55867 -10.24286 -9.70182 -9.11403 -8.27275 -7.47086 -7.18169 -6.16950 -4.03177 3.24776 3.29716 3.33043 3.61113 4.28566 4.52865 4.68608 5.23496 5.30467 5.51630 5.80976 5.83852 5.91501 6.03701 6.16856 6.32612 6.46752 6.57813 6.80643 7.37986 7.47371 7.58430 7.94951 8.53022 8.95162 9.13752 9.41585 10.42227 10.81781 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.097607 B = 0.010393 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.794459 B = 2693.396140 C = 2831.569561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 C -0.140 4.140 4 C -0.010 4.010 5 C -0.288 4.288 6 C 0.190 3.810 7 C -0.452 4.452 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.786 5.786 11 Si 0.903 3.097 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.270 1.270 15 N -0.329 5.329 16 N -0.436 5.436 17 H 0.413 0.587 18 H 0.054 0.946 19 H 0.056 0.944 20 H 0.049 0.951 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 4.326 6.932 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.040 4.040 3 C -0.198 4.198 4 C -0.138 4.138 5 C -0.320 4.320 6 C 0.040 3.960 7 C -0.491 4.491 8 H 0.094 0.906 9 C -0.145 4.145 10 N -0.416 5.416 11 Si 0.729 3.271 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.195 1.195 15 N -0.162 5.162 16 N -0.143 5.143 17 H 0.252 0.748 18 H 0.073 0.927 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.097 0.903 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.538 4.380 5.678 7.996 hybrid contribution 0.640 -0.340 0.268 0.773 sum -2.897 4.040 5.945 7.750 Atomic orbital electron populations 1.21832 0.95662 1.01786 1.01104 1.19527 0.94593 0.95058 0.94830 1.21818 1.01598 0.95574 1.00763 1.20919 0.98325 1.05667 0.88886 1.21350 1.01573 1.09986 0.99058 1.19277 0.92856 0.95381 0.88443 1.18475 1.08274 1.27919 0.94472 0.90628 1.25727 0.95679 0.95763 0.97342 1.69963 1.27721 1.37089 1.06797 0.86491 0.81721 0.80958 0.77971 1.19524 1.20898 1.19532 1.74699 1.09315 1.15640 1.16514 1.43543 1.22840 1.41638 1.06250 0.74811 0.92704 0.92491 0.93233 0.90272 0.93119 0.92340 0.93142 0.86320 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.94 37.16 0.33 -1.66 15 2 C -0.02 -0.32 3.31 -91.77 -0.30 -0.62 15 3 C -0.14 -1.99 9.17 37.16 0.34 -1.65 15 4 C -0.01 -0.23 5.93 -81.91 -0.49 -0.71 15 5 C -0.29 -7.27 10.89 -39.18 -0.43 -7.70 15 6 C 0.19 5.57 6.78 -84.72 -0.57 4.99 15 7 C -0.45 -13.31 9.42 -37.76 -0.36 -13.67 15 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 15 9 C 0.07 2.04 5.49 -17.35 -0.10 1.94 15 10 N -0.79 -23.29 11.97 55.54 0.66 -22.62 15 11 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 15 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 14 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 15 N -0.33 -9.48 10.50 32.34 0.34 -9.14 15 16 N -0.44 -10.24 6.67 33.59 0.22 -10.01 15 17 H 0.41 8.16 8.14 -190.43 -1.55 6.62 15 18 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.05 0.65 7.43 -51.93 -0.39 0.26 15 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.12 2.74 8.06 -52.49 -0.42 2.32 15 26 H 0.27 7.27 8.30 -40.82 -0.34 6.93 15 LS Contribution 228.58 15.07 3.44 3.44 Total: -1.00 -32.56 228.58 -6.36 -38.92 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.44 Total: 2.79 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.57 Total: -19.08 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.23 Total: -41.78 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -32.56 -6.36 -38.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408556.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.271 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds