Wall clock time and date at job start Mon Mar 30 2020 02:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.35068 * 126.31044 * 215.00227 * 4 2 1 6 6 C 1.42230 * 105.54848 * 179.97438 * 5 4 2 7 7 C 1.41424 * 126.56909 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99918 * 0.02562 * 7 6 5 9 9 C 1.39858 * 119.99975 * 179.97438 * 7 6 5 10 10 N 1.30885 * 120.00050 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99966 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46838 * 60.00475 * 11 9 7 13 13 H 1.48501 * 109.47050 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47517 * 300.00609 * 11 9 7 15 15 N 1.32759 * 106.86485 * 359.97438 * 6 5 4 16 16 N 1.28477 * 109.92774 * 359.71783 * 15 6 5 17 17 H 0.97003 * 124.86475 * 180.28651 * 16 15 6 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.08000 * 127.22941 * 359.97438 * 5 4 2 26 26 H 0.97005 * 120.00349 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 3.1395 -1.4794 -1.3141 6 6 3.1932 -1.9251 -2.6637 7 6 4.1797 -2.7611 -3.2365 8 1 4.9963 -3.1257 -2.6310 9 6 4.0973 -3.1163 -4.5867 10 7 3.1075 -2.6747 -5.3203 11 14 5.4008 -4.2199 -5.3433 12 1 5.4213 -5.5223 -4.6303 13 1 5.0872 -4.4449 -6.7773 14 1 6.7303 -3.5693 -5.2240 15 7 2.1397 -1.4061 -3.2829 16 7 1.4509 -0.7011 -2.4588 17 1 0.6344 -0.2274 -2.6821 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 3.8376 -1.7080 -0.5224 26 1 3.0505 -2.9208 -6.2569 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408556.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:46 Heat of formation + Delta-G solvation = 27.243229 kcal Electronic energy + Delta-G solvation = -10503.631458 eV Core-core repulsion = 8582.198082 eV Total energy + Delta-G solvation = -1921.433376 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.30596 -36.38291 -35.12647 -31.99040 -29.79675 -28.05938 -27.41949 -23.29369 -21.64647 -21.05307 -18.23328 -17.62629 -16.49833 -15.73159 -15.29475 -14.89507 -14.40980 -14.00622 -13.66830 -13.03544 -13.00328 -12.82991 -12.51722 -12.10381 -12.04266 -11.86347 -11.51732 -11.15629 -10.31621 -9.52822 -9.12638 -8.27022 -6.22538 1.42968 1.44359 1.55896 1.79000 2.35672 2.42742 2.94683 3.65278 3.92979 4.08623 4.32436 4.64614 4.78984 4.81950 4.96833 4.98459 5.15021 5.27840 5.39405 5.43191 5.48771 5.67119 5.94164 6.43196 6.99823 7.04254 7.32829 8.38002 8.73435 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.097607 B = 0.010393 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.794459 B = 2693.396140 C = 2831.569561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.020 4.020 3 C -0.135 4.135 4 C 0.023 3.977 5 C -0.327 4.327 6 C 0.151 3.849 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.021 3.979 10 N -0.827 5.827 11 Si 0.986 3.014 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.261 1.261 15 N -0.372 5.372 16 N -0.433 5.433 17 H 0.428 0.572 18 H 0.089 0.911 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.131 0.869 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 4.814 8.023 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.040 4.040 3 C -0.193 4.193 4 C -0.106 4.106 5 C -0.357 4.357 6 C 0.001 3.999 7 C -0.530 4.530 8 H 0.097 0.903 9 C -0.193 4.193 10 N -0.457 5.457 11 Si 0.807 3.193 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.186 1.186 15 N -0.206 5.206 16 N -0.141 5.141 17 H 0.270 0.730 18 H 0.108 0.892 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.149 0.851 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.736 4.884 6.784 9.156 hybrid contribution 0.610 -0.401 0.031 0.731 sum -3.126 4.483 6.815 8.735 Atomic orbital electron populations 1.21820 0.93320 1.01816 1.03075 1.19760 0.96542 0.95685 0.92040 1.21784 1.00836 0.94236 1.02451 1.21653 0.96203 1.02975 0.89791 1.21610 1.03845 1.12068 0.98189 1.19760 0.93411 0.96238 0.90494 1.18911 1.09093 1.29255 0.95783 0.90335 1.26723 0.98119 0.97065 0.97359 1.70099 1.29831 1.38522 1.07228 0.85221 0.78344 0.78646 0.77071 1.18550 1.19937 1.18574 1.74561 1.10184 1.17228 1.18579 1.43523 1.23055 1.40970 1.06520 0.73033 0.89199 0.93478 0.92883 0.88934 0.89332 0.93600 0.93583 0.85112 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.94 71.98 0.64 -2.74 15 2 C -0.02 -0.59 3.31 -11.54 -0.04 -0.63 15 3 C -0.14 -3.43 9.17 71.98 0.66 -2.77 15 4 C 0.02 0.96 5.93 41.20 0.24 1.21 15 5 C -0.33 -16.70 10.89 22.53 0.25 -16.45 15 6 C 0.15 9.13 6.78 40.78 0.28 9.41 15 7 C -0.49 -29.81 9.42 23.45 0.22 -29.59 15 8 H 0.08 4.49 7.84 -2.91 -0.02 4.46 15 9 C 0.02 1.19 5.49 85.23 0.47 1.66 15 10 N -0.83 -50.17 11.97 21.81 0.26 -49.91 15 11 Si 0.99 43.08 29.56 68.60 2.03 45.10 15 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 14 H -0.26 -10.93 7.11 99.48 0.71 -10.23 15 15 N -0.37 -22.00 10.50 -51.61 -0.54 -22.54 15 16 N -0.43 -20.32 6.67 -47.63 -0.32 -20.64 15 17 H 0.43 16.69 8.14 -219.98 -1.79 14.90 15 18 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.05 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.05 1.22 7.43 -2.38 -0.02 1.20 15 21 H 0.09 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 25 H 0.13 6.11 8.06 -2.91 -0.02 6.09 15 26 H 0.27 15.08 8.30 -92.70 -0.77 14.31 15 Total: -1.00 -72.38 228.58 3.53 -68.85 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.62 Total: 19.04 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 2.72 Total: -39.91 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -0.60 Total: -93.09 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.38 3.53 -68.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408556.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.093 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds