Wall clock time and date at job start Mon Mar 30 2020 02:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47101 * 2 1 4 4 C 1.50701 * 109.46904 * 239.99621 * 2 1 3 5 5 N 1.31010 * 125.18038 * 264.69435 * 4 2 1 6 6 C 1.33015 * 109.98227 * 179.82610 * 5 4 2 7 7 C 1.39617 * 107.46261 * 0.43152 * 6 5 4 8 8 C 1.40059 * 127.06256 * 179.71840 * 7 6 5 9 9 H 1.08000 * 120.00223 * 187.38567 * 8 7 6 10 10 C 1.40076 * 120.00154 * 7.38798 * 8 7 6 11 11 N 1.30854 * 119.99742 * 10.60072 * 10 8 7 12 12 Si 1.86795 * 120.00261 * 190.59836 * 10 8 7 13 13 H 1.48504 * 109.46785 * 93.90241 * 12 10 8 14 14 H 1.48502 * 109.47189 * 213.89919 * 12 10 8 15 15 H 1.48502 * 109.47392 * 333.90270 * 12 10 8 16 16 N 1.35074 * 125.17714 * 85.00317 * 4 2 1 17 17 H 0.97006 * 126.48148 * 359.97438 * 16 4 2 18 18 H 1.09005 * 109.47121 * 299.99942 * 1 2 3 19 19 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47447 * 60.00100 * 1 2 3 21 21 H 1.09003 * 109.47020 * 120.00184 * 2 1 3 22 22 H 1.08994 * 109.47696 * 59.99589 * 3 2 1 23 23 H 1.08997 * 109.47422 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47333 * 299.99992 * 3 2 1 25 25 H 1.07998 * 126.27027 * 180.17730 * 6 5 4 26 26 H 0.96997 * 120.00258 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.3772 -1.9732 -1.2850 6 6 2.7711 -2.2840 -2.5169 7 6 2.6749 -1.1268 -3.2920 8 6 2.9930 -0.9910 -4.6492 9 1 2.9894 -0.0140 -5.1096 10 6 3.3159 -2.1223 -5.4095 11 7 3.1218 -3.3188 -4.9168 12 14 4.0236 -1.9228 -7.1267 13 1 5.5067 -1.9545 -7.0575 14 1 3.5446 -3.0310 -7.9913 15 1 3.5823 -0.6242 -7.6962 16 7 2.2010 -0.1409 -2.4435 17 1 2.0233 0.7839 -2.6762 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 3.1079 -3.2529 -2.8546 26 1 3.3450 -4.1023 -5.4434 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:55 Heat of formation + Delta-G solvation = 24.171017 kcal Electronic energy + Delta-G solvation = -10534.858977 eV Core-core repulsion = 8613.292380 eV Total energy + Delta-G solvation = -1921.566597 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.88007 -34.69678 -33.31480 -30.82156 -28.06516 -26.70928 -24.74132 -21.36821 -19.69011 -18.82080 -17.31001 -15.58089 -14.64270 -14.16308 -13.42044 -13.30022 -12.70351 -12.19703 -11.94676 -11.72466 -11.45982 -11.26628 -10.71310 -10.67320 -10.55612 -10.43618 -10.10994 -9.27510 -8.29144 -8.17126 -6.84499 -6.62430 -4.16971 2.98754 3.11148 3.14332 3.76006 3.96703 4.73146 4.81436 5.36099 5.44712 5.49170 5.71390 5.95369 6.05516 6.16949 6.32770 6.46663 6.67722 6.76029 7.12207 7.19902 7.70022 7.77046 8.05072 8.56229 8.92636 9.02447 9.31278 10.03933 10.36861 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.084080 B = 0.010880 C = 0.010175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.937481 B = 2572.810462 C = 2751.156405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 C -0.144 4.144 4 C 0.080 3.920 5 N -0.482 5.482 6 C -0.130 4.130 7 C 0.178 3.822 8 C -0.454 4.454 9 H 0.070 0.930 10 C 0.075 3.925 11 N -0.800 5.800 12 Si 0.922 3.078 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.266 1.266 16 N -0.604 5.604 17 H 0.393 0.607 18 H 0.048 0.952 19 H 0.056 0.944 20 H 0.047 0.953 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.174 0.826 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 6.021 2.422 6.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 C -0.202 4.202 4 C -0.174 4.174 5 N -0.202 5.202 6 C -0.279 4.279 7 C 0.065 3.935 8 C -0.489 4.489 9 H 0.088 0.912 10 C -0.142 4.142 11 N -0.428 5.428 12 Si 0.747 3.253 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.190 1.190 16 N -0.215 5.215 17 H 0.227 0.773 18 H 0.067 0.933 19 H 0.076 0.924 20 H 0.066 0.934 21 H 0.098 0.902 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.191 0.809 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.597 5.136 3.110 6.213 hybrid contribution 0.266 1.041 -1.737 2.042 sum -1.331 6.177 1.373 6.466 Atomic orbital electron populations 1.21829 0.95606 1.01852 1.00388 1.19101 0.94411 0.93688 0.93894 1.21817 1.01225 0.96246 1.00901 1.21833 1.16875 0.91197 0.87499 1.69376 1.15185 1.11414 1.24175 1.23008 1.17373 0.99892 0.87656 1.19017 0.96145 0.87310 0.90995 1.18335 1.43963 0.94510 0.92110 0.91210 1.25637 0.94052 0.94341 1.00154 1.69726 1.36526 0.98690 1.37820 0.86088 0.79622 0.78731 0.80851 1.19577 1.20291 1.19013 1.42876 1.56988 1.11137 1.10478 0.77267 0.93311 0.92444 0.93377 0.90193 0.92752 0.92657 0.93373 0.80883 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.18 37.16 0.34 -1.90 15 2 C 0.01 0.17 3.39 -91.77 -0.31 -0.14 15 3 C -0.14 -2.16 8.93 37.15 0.33 -1.83 15 4 C 0.08 1.92 6.84 -154.96 -1.06 0.86 15 5 N -0.48 -13.33 11.18 -9.77 -0.11 -13.43 15 6 C -0.13 -3.82 10.85 -16.52 -0.18 -4.00 15 7 C 0.18 4.97 6.93 -83.69 -0.58 4.39 15 8 C -0.45 -12.29 9.44 -38.21 -0.36 -12.65 15 9 H 0.07 1.77 7.87 -52.49 -0.41 1.36 15 10 C 0.08 1.94 5.45 -17.28 -0.09 1.85 15 11 N -0.80 -21.50 10.60 55.56 0.59 -20.91 15 12 Si 0.92 19.16 29.57 -169.99 -5.03 14.13 15 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 14 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 16 N -0.60 -14.50 5.97 -7.86 -0.05 -14.54 15 17 H 0.39 8.08 8.11 -40.82 -0.33 7.75 15 18 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.05 0.69 7.38 -51.93 -0.38 0.31 15 25 H 0.17 5.25 6.06 -52.49 -0.32 4.93 15 26 H 0.28 6.77 8.30 -40.82 -0.34 6.44 15 LS Contribution 226.19 15.07 3.41 3.41 Total: -1.00 -30.33 226.19 -6.21 -36.54 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.12 Total: 8.23 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.91 Total: -13.42 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.43 Total: -48.89 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.33 -6.21 -36.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.715 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds