Wall clock time and date at job start Mon Mar 30 2020 02:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47101 * 2 1 4 4 C 1.50701 * 109.46904 * 239.99621 * 2 1 3 5 5 N 1.31010 * 125.18038 * 264.69435 * 4 2 1 6 6 C 1.33015 * 109.98227 * 179.82610 * 5 4 2 7 7 C 1.39617 * 107.46261 * 0.43152 * 6 5 4 8 8 C 1.40059 * 127.06256 * 179.71840 * 7 6 5 9 9 H 1.08000 * 120.00223 * 187.38567 * 8 7 6 10 10 C 1.40076 * 120.00154 * 7.38798 * 8 7 6 11 11 N 1.30854 * 119.99742 * 10.60072 * 10 8 7 12 12 Si 1.86795 * 120.00261 * 190.59836 * 10 8 7 13 13 H 1.48504 * 109.46785 * 93.90241 * 12 10 8 14 14 H 1.48502 * 109.47189 * 213.89919 * 12 10 8 15 15 H 1.48502 * 109.47392 * 333.90270 * 12 10 8 16 16 N 1.35074 * 125.17714 * 85.00317 * 4 2 1 17 17 H 0.97006 * 126.48148 * 359.97438 * 16 4 2 18 18 H 1.09005 * 109.47121 * 299.99942 * 1 2 3 19 19 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47447 * 60.00100 * 1 2 3 21 21 H 1.09003 * 109.47020 * 120.00184 * 2 1 3 22 22 H 1.08994 * 109.47696 * 59.99589 * 3 2 1 23 23 H 1.08997 * 109.47422 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47333 * 299.99992 * 3 2 1 25 25 H 1.07998 * 126.27027 * 180.17730 * 6 5 4 26 26 H 0.96997 * 120.00258 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.3772 -1.9732 -1.2850 6 6 2.7711 -2.2840 -2.5169 7 6 2.6749 -1.1268 -3.2920 8 6 2.9930 -0.9910 -4.6492 9 1 2.9894 -0.0140 -5.1096 10 6 3.3159 -2.1223 -5.4095 11 7 3.1218 -3.3188 -4.9168 12 14 4.0236 -1.9228 -7.1267 13 1 5.5067 -1.9545 -7.0575 14 1 3.5446 -3.0310 -7.9913 15 1 3.5823 -0.6242 -7.6962 16 7 2.2010 -0.1409 -2.4435 17 1 2.0233 0.7839 -2.6762 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 3.1079 -3.2529 -2.8546 26 1 3.3450 -4.1023 -5.4434 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:55 Heat of formation + Delta-G solvation = 4.174002 kcal Electronic energy + Delta-G solvation = -10535.726113 eV Core-core repulsion = 8613.292380 eV Total energy + Delta-G solvation = -1922.433732 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.87279 -36.28201 -35.17842 -32.86045 -30.06439 -27.94925 -26.67531 -23.07539 -21.74017 -20.71508 -19.17511 -17.56605 -16.33333 -15.70943 -15.17749 -14.87356 -14.53844 -13.92544 -13.64618 -13.22519 -13.03338 -12.89767 -12.62543 -12.14331 -12.02196 -11.91157 -11.71954 -11.18050 -10.33751 -10.25751 -8.91769 -8.56665 -6.25014 1.30243 1.41416 1.56717 1.87940 2.21867 2.72958 2.95286 3.36630 3.88419 4.14437 4.35790 4.61908 4.79878 4.97183 5.01373 5.06157 5.15817 5.22689 5.36456 5.44499 5.69240 5.71769 5.97975 6.52971 6.85223 6.93031 7.41979 7.98799 8.44942 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.084080 B = 0.010880 C = 0.010175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.937481 B = 2572.810462 C = 2751.156405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.004 3.996 3 C -0.137 4.137 4 C 0.108 3.892 5 N -0.522 5.522 6 C -0.177 4.177 7 C 0.156 3.844 8 C -0.484 4.484 9 H 0.081 0.919 10 C 0.027 3.973 11 N -0.835 5.835 12 Si 1.005 2.995 13 H -0.265 1.265 14 H -0.269 1.269 15 H -0.255 1.255 16 N -0.597 5.597 17 H 0.410 0.590 18 H 0.090 0.910 19 H 0.036 0.964 20 H 0.047 0.953 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.151 0.849 26 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 8.045 2.268 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.016 4.016 3 C -0.195 4.195 4 C -0.150 4.150 5 N -0.242 5.242 6 C -0.323 4.323 7 C 0.043 3.957 8 C -0.519 4.519 9 H 0.100 0.900 10 C -0.186 4.186 11 N -0.463 5.463 12 Si 0.825 3.175 13 H -0.190 1.190 14 H -0.194 1.194 15 H -0.178 1.178 16 N -0.209 5.209 17 H 0.248 0.752 18 H 0.109 0.891 19 H 0.055 0.945 20 H 0.066 0.934 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.168 0.832 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.933 7.163 2.951 7.984 hybrid contribution 0.312 0.434 -1.552 1.641 sum -1.621 7.597 1.399 7.893 Atomic orbital electron populations 1.21768 0.93544 1.01224 1.02492 1.19428 0.96023 0.95290 0.90907 1.21780 1.00658 0.93898 1.03163 1.23053 1.12649 0.90391 0.88941 1.69340 1.17398 1.13668 1.23819 1.22788 1.20447 1.00037 0.89069 1.19245 0.96817 0.87826 0.91844 1.18746 1.45215 0.95661 0.92239 0.90039 1.26767 0.93584 0.93524 1.04763 1.69842 1.36829 0.99785 1.39806 0.84862 0.78641 0.79225 0.74803 1.18986 1.19391 1.17843 1.42837 1.56424 1.11606 1.10039 0.75219 0.89131 0.94494 0.93352 0.89996 0.88980 0.93574 0.92675 0.83232 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.18 71.98 0.66 -3.23 15 2 C 0.00 0.13 3.39 -11.54 -0.04 0.10 15 3 C -0.14 -3.61 8.93 71.98 0.64 -2.96 15 4 C 0.11 5.10 6.84 137.97 0.94 6.04 15 5 N -0.52 -29.64 11.18 -184.81 -2.07 -31.70 15 6 C -0.18 -10.85 10.85 84.85 0.92 -9.93 15 7 C 0.16 8.90 6.93 38.88 0.27 9.17 15 8 C -0.48 -26.49 9.44 23.16 0.22 -26.28 15 9 H 0.08 4.11 7.87 -2.91 -0.02 4.09 15 10 C 0.03 1.42 5.45 85.28 0.46 1.89 15 11 N -0.83 -46.21 10.60 21.86 0.23 -45.97 15 12 Si 1.00 38.93 29.57 68.60 2.03 40.96 15 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 14 H -0.27 -9.97 7.11 99.48 0.71 -9.27 15 15 H -0.25 -9.35 7.11 99.48 0.71 -8.64 15 16 N -0.60 -28.46 5.97 -178.78 -1.07 -29.53 15 17 H 0.41 16.31 8.11 -92.70 -0.75 15.56 15 18 H 0.09 1.95 8.14 -2.38 -0.02 1.93 15 19 H 0.04 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 22 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.05 1.37 7.38 -2.39 -0.02 1.36 15 25 H 0.15 9.68 6.06 -2.91 -0.02 9.66 15 26 H 0.29 14.25 8.30 -92.71 -0.77 13.48 15 Total: -1.00 -67.78 226.19 3.63 -64.14 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.43 Total: 27.30 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.08 Total: -25.20 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -2.90 Total: -107.20 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.78 3.63 -64.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.316 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds