Wall clock time and date at job start Mon Mar 30 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34323 * 126.32413 * 2 1 4 4 H 0.97000 * 125.74606 * 359.96247 * 3 2 1 5 5 N 1.39921 * 108.50183 * 179.97438 * 3 2 1 6 6 C 1.30427 * 108.98162 * 359.97438 * 5 3 2 7 7 C 1.38397 * 126.32583 * 179.68882 * 2 1 3 8 8 C 1.47500 * 126.44223 * 0.02562 * 7 2 1 9 9 O 1.21813 * 119.99927 * 359.97438 * 8 7 2 10 10 C 1.46144 * 120.00189 * 179.97438 * 8 7 2 11 11 H 1.08002 * 119.99935 * 0.02562 * 10 8 7 12 12 C 1.40272 * 120.00366 * 180.02562 * 10 8 7 13 13 N 1.30570 * 119.99498 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00042 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47314 * 59.99861 * 14 12 10 16 16 H 1.48504 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46871 * 299.99682 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02464 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02565 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02546 * 1 2 3 21 21 H 1.07993 * 125.97987 * 179.97438 * 6 5 3 22 22 H 0.97001 * 119.99209 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3027 1.0822 0.0000 4 1 2.0041 2.0051 -0.0005 5 7 3.6348 0.6540 0.0006 6 6 3.6612 -0.6500 0.0015 7 6 2.3269 -1.1150 0.0061 8 6 1.8899 -2.5238 0.0132 9 8 0.7019 -2.7930 0.0146 10 6 2.8822 -3.5966 0.0185 11 1 3.9356 -3.3580 0.0177 12 6 2.4667 -4.9364 0.0247 13 7 1.1933 -5.2249 0.0263 14 14 3.7352 -6.3076 0.0323 15 1 4.5844 -6.1898 1.2448 16 1 3.0435 -7.6217 0.0388 17 1 4.5859 -6.2016 -1.1802 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5134 20 1 -0.3633 -0.8898 0.5142 21 1 4.5477 -1.2667 0.0017 22 1 0.9060 -6.1514 0.0310 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408671.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:04 Heat of formation + Delta-G solvation = -4.820980 kcal Electronic energy + Delta-G solvation = -10273.478566 eV Core-core repulsion = 8214.821687 eV Total energy + Delta-G solvation = -2058.656879 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.97918 -38.19942 -34.66803 -33.43884 -31.88049 -29.03527 -27.54594 -23.48081 -22.57791 -20.24329 -18.74230 -17.63565 -16.66654 -15.91990 -15.27757 -15.02443 -14.86552 -13.93751 -13.72775 -13.59380 -13.18780 -12.86897 -12.66606 -12.44709 -12.04783 -11.58395 -10.89037 -10.43804 -9.50561 -9.32542 -8.22280 -6.84663 0.79183 1.36267 1.43805 1.57536 1.59658 2.00413 2.29358 2.63573 3.76175 3.87003 3.97599 4.27756 4.72429 4.79913 4.83942 5.05573 5.28657 5.35542 5.69442 6.09778 6.45677 6.69983 6.84755 6.88761 8.34525 8.61566 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.064123 B = 0.013283 C = 0.011069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.557869 B = 2107.492211 C = 2528.904685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.116 3.884 3 N -0.458 5.458 4 H 0.451 0.549 5 N -0.325 5.325 6 C 0.082 3.918 7 C -0.308 4.308 8 C 0.407 3.593 9 O -0.581 6.581 10 C -0.555 4.555 11 H 0.089 0.911 12 C 0.027 3.973 13 N -0.805 5.805 14 Si 0.990 3.010 15 H -0.255 1.255 16 H -0.273 1.273 17 H -0.254 1.254 18 H 0.085 0.915 19 H 0.102 0.898 20 H 0.072 0.928 21 H 0.199 0.801 22 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 6.687 -0.023 7.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 N -0.168 5.168 4 H 0.298 0.702 5 N -0.148 5.148 6 C -0.104 4.104 7 C -0.320 4.320 8 C 0.303 3.697 9 O -0.472 6.472 10 C -0.587 4.587 11 H 0.107 0.893 12 C -0.190 4.190 13 N -0.435 5.435 14 Si 0.809 3.191 15 H -0.178 1.178 16 H -0.198 1.198 17 H -0.178 1.178 18 H 0.103 0.897 19 H 0.121 0.879 20 H 0.091 0.909 21 H 0.216 0.784 22 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.602 7.536 -0.020 7.972 hybrid contribution -0.173 -0.935 -0.013 0.950 sum 2.430 6.601 -0.033 7.034 Atomic orbital electron populations 1.20517 0.85203 1.04425 1.03987 1.22023 0.95681 0.86991 0.96897 1.45983 1.03560 1.08437 1.58841 0.70204 1.76863 0.97101 1.13474 1.27322 1.24229 0.98182 0.91435 0.96603 1.21806 0.93716 0.97105 1.19400 1.19172 0.88744 0.85861 0.75887 1.90384 1.20428 1.85852 1.50561 1.22085 0.95289 0.91673 1.49633 0.89316 1.27086 0.97739 1.02745 0.91407 1.70085 1.18170 1.20748 1.34460 0.85180 0.77958 0.75568 0.80369 1.17848 1.19783 1.17832 0.89680 0.87923 0.90900 0.78426 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 9.91 71.24 0.71 -2.07 14 2 C 0.12 4.55 7.31 42.22 0.31 4.86 14 3 N -0.46 -14.93 7.29 -46.55 -0.34 -15.27 14 4 H 0.45 10.24 8.96 -213.43 -1.91 8.32 14 5 N -0.33 -12.20 12.63 -56.28 -0.71 -12.91 14 6 C 0.08 3.37 11.47 85.65 0.98 4.36 14 7 C -0.31 -14.74 6.12 -20.05 -0.12 -14.86 14 8 C 0.41 23.69 7.09 26.77 0.19 23.88 14 9 O -0.58 -37.21 13.54 -4.71 -0.06 -37.28 14 10 C -0.55 -31.25 9.20 24.82 0.23 -31.02 14 11 H 0.09 4.47 6.98 -2.91 -0.02 4.45 14 12 C 0.03 1.45 5.51 85.37 0.47 1.92 14 13 N -0.80 -47.81 11.82 21.88 0.26 -47.55 14 14 Si 0.99 40.03 29.56 68.60 2.03 42.06 14 15 H -0.25 -9.74 7.11 99.48 0.71 -9.03 14 16 H -0.27 -10.62 7.11 99.48 0.71 -9.91 14 17 H -0.25 -9.73 7.11 99.48 0.71 -9.02 14 18 H 0.08 2.67 8.14 -2.39 -0.02 2.65 14 19 H 0.10 2.41 8.14 -2.39 -0.02 2.39 14 20 H 0.07 3.03 6.50 -2.38 -0.02 3.02 14 21 H 0.20 7.29 7.40 -2.91 -0.02 7.27 14 22 H 0.28 14.89 8.29 -92.71 -0.77 14.12 14 Total: -1.00 -72.91 207.17 3.28 -69.63 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.66 Total: 14.26 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 2.76 Total: -12.94 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -0.79 Total: -75.73 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.06 Total: -37.28 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -72.91 3.28 -69.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408671.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.811 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds