Wall clock time and date at job start Mon Mar 30 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39939 * 120.88137 * 2 1 4 4 C 1.41155 * 120.36167 * 0.02562 * 3 2 1 5 5 H 1.08003 * 119.99813 * 359.97438 * 4 3 2 6 6 C 1.40294 * 119.99814 * 179.97438 * 4 3 2 7 7 N 1.30562 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99803 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47329 * 120.00528 * 8 6 4 11 11 H 1.48501 * 109.47233 * 240.00353 * 8 6 4 12 12 N 1.35713 * 119.27686 * 180.02562 * 3 2 1 13 13 C 1.30123 * 121.21936 * 359.97438 * 12 3 2 14 14 N 1.35622 * 121.94096 * 0.02654 * 13 12 3 15 15 H 0.97001 * 119.72091 * 179.97438 * 14 13 12 16 16 C 1.34905 * 120.55182 * 0.25748 * 14 13 12 17 17 O 1.21953 * 120.61155 * 179.70249 * 16 14 13 18 18 H 1.08996 * 109.47316 * 89.99639 * 1 2 3 19 19 H 1.08992 * 109.47316 * 210.00219 * 1 2 3 20 20 H 1.09002 * 109.46764 * 330.00135 * 1 2 3 21 21 H 0.96999 * 120.00691 * 179.97438 * 7 6 4 22 22 H 1.08005 * 119.03448 * 180.02562 * 13 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2252 1.2010 0.0000 4 6 1.5461 2.4385 0.0005 5 1 0.4663 2.4619 0.0005 6 6 2.2738 3.6379 0.0011 7 7 3.5791 3.6097 0.0006 8 14 1.3751 5.2756 0.0025 9 1 -0.0904 5.0360 0.0035 10 1 1.7512 6.0456 1.2153 11 1 1.7501 6.0471 -1.2096 12 7 3.5818 1.1630 -0.0005 13 6 4.2248 0.0318 -0.0005 14 7 3.5788 -1.1607 -0.0006 15 1 4.0905 -1.9848 -0.0009 16 6 2.2307 -1.2104 -0.0058 17 8 1.6488 -2.2821 -0.0113 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 4.0823 4.4390 0.0006 22 1 5.3048 0.0427 -0.0005 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408678.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:20 Heat of formation + Delta-G solvation = -38.706393 kcal Electronic energy + Delta-G solvation = -10463.347921 eV Core-core repulsion = 8403.221661 eV Total energy + Delta-G solvation = -2060.126260 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.50258 -37.96922 -36.25600 -34.22465 -32.47070 -29.18685 -27.29735 -23.74929 -23.24155 -19.82753 -18.75443 -18.15467 -17.11139 -16.22730 -16.13948 -14.90484 -14.61347 -13.68899 -13.51807 -13.49311 -13.31610 -13.01503 -12.88135 -12.20679 -11.91580 -11.58382 -10.62787 -10.55226 -10.17151 -8.91877 -8.60300 -6.77404 0.52358 1.42974 1.44577 1.58444 1.75283 2.18479 2.55186 2.69402 3.69877 3.89267 4.61507 4.71201 4.88052 4.99393 5.01888 5.12247 5.51839 5.72230 5.93707 6.22536 6.27063 6.48715 6.81344 7.63648 7.80400 8.19322 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.063247 B = 0.015037 C = 0.012229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.602240 B = 1861.622669 C = 2289.078488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.492 4.492 3 C 0.253 3.747 4 C -0.416 4.416 5 H 0.098 0.902 6 C 0.026 3.974 7 N -0.723 5.723 8 Si 0.992 3.008 9 H -0.257 1.257 10 H -0.260 1.260 11 H -0.260 1.260 12 N -0.510 5.510 13 C 0.337 3.663 14 N -0.659 5.659 15 H 0.411 0.589 16 C 0.506 3.494 17 O -0.654 6.654 18 H 0.025 0.975 19 H 0.026 0.974 20 H 0.053 0.947 21 H 0.294 0.706 22 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 3.966 0.087 5.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.499 4.499 3 C 0.140 3.860 4 C -0.444 4.444 5 H 0.116 0.884 6 C -0.200 4.200 7 N -0.342 5.342 8 Si 0.811 3.189 9 H -0.181 1.181 10 H -0.184 1.184 11 H -0.184 1.184 12 N -0.230 5.230 13 C 0.048 3.952 14 N -0.301 5.301 15 H 0.249 0.751 16 C 0.318 3.682 17 O -0.548 6.548 18 H 0.044 0.956 19 H 0.045 0.955 20 H 0.072 0.928 21 H 0.105 0.895 22 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.740 4.492 0.088 5.846 hybrid contribution -0.438 -0.710 -0.025 0.835 sum 3.302 3.781 0.063 5.021 Atomic orbital electron populations 1.19569 0.91496 0.99032 0.98383 1.20984 0.97290 0.91489 1.40187 1.18831 0.87533 0.93012 0.86573 1.20345 0.95755 0.89908 1.38355 0.88420 1.27183 0.95778 1.04976 0.92105 1.69977 1.08110 1.31525 1.24620 0.84994 0.79443 0.75079 0.79391 1.18057 1.18405 1.18422 1.69320 1.09487 1.23287 1.20863 1.25860 1.00718 0.79608 0.89038 1.44434 1.08264 1.11034 1.66367 0.75150 1.16939 0.81841 0.90201 0.79243 1.90661 1.69608 1.33313 1.61261 0.95591 0.95461 0.92822 0.89497 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.35 9.36 71.23 0.67 -0.69 14 2 C -0.49 -26.81 6.03 -18.77 -0.11 -26.92 14 3 C 0.25 13.57 6.58 39.67 0.26 13.83 14 4 C -0.42 -21.21 8.71 23.49 0.20 -21.01 14 5 H 0.10 4.81 6.10 -2.91 -0.02 4.79 14 6 C 0.03 1.19 5.50 85.38 0.47 1.66 14 7 N -0.72 -33.53 11.48 21.88 0.25 -33.28 14 8 Si 0.99 33.89 29.56 68.60 2.03 35.92 14 9 H -0.26 -8.77 7.11 99.48 0.71 -8.07 14 10 H -0.26 -8.43 7.11 99.48 0.71 -7.72 14 11 H -0.26 -8.45 7.11 99.48 0.71 -7.74 14 12 N -0.51 -24.67 7.98 -191.71 -1.53 -26.20 14 13 C 0.34 12.86 12.35 180.19 2.23 15.08 14 14 N -0.66 -26.70 5.26 -322.68 -1.70 -28.40 14 15 H 0.41 13.18 8.91 -92.71 -0.83 12.36 14 16 C 0.51 26.68 7.74 84.90 0.66 27.34 14 17 O -0.65 -37.96 17.19 -5.16 -0.09 -38.04 14 18 H 0.03 1.24 8.14 -2.39 -0.02 1.22 14 19 H 0.03 1.36 7.70 -2.39 -0.02 1.34 14 20 H 0.05 2.52 6.41 -2.39 -0.02 2.50 14 21 H 0.29 11.90 8.29 -92.71 -0.77 11.13 14 22 H 0.24 5.79 8.06 -2.91 -0.02 5.77 14 Total: -1.00 -68.90 202.66 3.77 -65.13 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.43 Total: 15.58 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 4.37 Total: 9.29 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -2.98 Total: -87.88 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.09 Total: -38.04 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.03 Total: 35.92 kcal Total: -68.90 3.77 -65.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408678.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.428 kcal (2) G-P(sol) polarization free energy of solvation -68.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds