Wall clock time and date at job start Mon Mar 30 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31046 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48499 * 109.46927 * 274.98253 * 3 2 1 5 5 H 1.48493 * 109.47175 * 34.98376 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.98851 * 3 2 1 7 7 C 1.39669 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00094 * 174.00681 * 7 2 1 9 9 C 1.41115 * 119.99822 * 354.27744 * 7 2 1 10 10 C 1.39077 * 126.37292 * 185.11606 * 9 7 2 11 11 N 1.36145 * 106.34295 * 179.70756 * 10 9 7 12 12 C 1.36393 * 108.37907 * 0.93968 * 11 10 9 13 13 N 1.31629 * 108.62094 * 359.00286 * 12 11 10 14 14 O 1.35907 * 111.53613 * 178.87869 * 12 11 10 15 15 C 1.43881 * 108.25189 * 18.72349 * 14 12 11 16 16 C 1.47366 * 143.47869 * 180.87420 * 11 10 9 17 17 H 0.96994 * 120.00216 * 359.97438 * 1 2 3 18 18 H 1.07995 * 126.82163 * 359.82309 * 10 9 7 19 19 H 1.08999 * 110.84758 * 91.27478 * 15 14 12 20 20 H 1.09002 * 110.84237 * 214.67837 * 15 14 12 21 21 H 1.08997 * 110.84812 * 46.61099 * 16 11 10 22 22 H 1.09000 * 111.02023 * 283.06981 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 2.3865 2.1073 -1.3948 5 1 1.4985 2.6200 0.8027 6 1 3.5907 1.4121 0.5920 7 6 2.0089 -1.2095 -0.0005 8 1 3.0844 -1.2120 -0.0982 9 6 1.3086 -2.4286 0.1208 10 6 1.8715 -3.6953 0.2352 11 7 0.8320 -4.5689 0.3337 12 6 -0.3322 -3.8622 0.2601 13 7 -0.0412 -2.5840 0.1417 14 8 -1.4166 -4.6787 0.3276 15 6 -0.9993 -5.9368 0.8871 16 6 0.4941 -5.9949 0.4892 17 1 -0.4850 0.8400 0.0004 18 1 2.9239 -3.9373 0.2459 19 1 -1.1119 -5.9357 1.9713 20 1 -1.5547 -6.7625 0.4421 21 1 1.0891 -6.4504 1.2808 22 1 0.6247 -6.5323 -0.4500 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408692.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:13 Heat of formation + Delta-G solvation = 52.883744 kcal Electronic energy + Delta-G solvation = -10443.329142 eV Core-core repulsion = 8387.174528 eV Total energy + Delta-G solvation = -2056.154614 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.02663 -37.43066 -33.31116 -32.17099 -28.57919 -27.90751 -25.11786 -22.36801 -20.08047 -19.73188 -16.80372 -16.39473 -15.48361 -15.24491 -14.47777 -13.73033 -13.22962 -12.81056 -12.53079 -11.83728 -11.61289 -11.09710 -10.86204 -10.34780 -10.27574 -9.94812 -9.10290 -8.05644 -8.03112 -6.72934 -6.20030 -4.00856 3.13852 3.28431 3.30922 3.34914 3.60822 3.97936 4.25619 4.59097 4.69251 5.08253 5.31907 5.44127 5.71695 5.81576 6.16556 6.54250 7.19219 7.51982 7.79205 7.91790 8.37471 8.79813 9.11574 9.27986 9.90954 10.73934 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.104278 B = 0.012002 C = 0.010895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 268.449806 B = 2332.413777 C = 2569.438820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.219 3.781 10 C -0.215 4.215 11 N -0.514 5.514 12 C 0.311 3.689 13 N -0.432 5.432 14 O -0.283 6.283 15 C 0.047 3.953 16 C 0.080 3.920 17 H 0.268 0.732 18 H 0.146 0.854 19 H 0.077 0.923 20 H 0.112 0.888 21 H 0.086 0.914 22 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -8.213 1.604 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.337 4.337 11 N -0.220 5.220 12 C 0.015 3.985 13 N -0.168 5.168 14 O -0.189 6.189 15 C -0.030 4.030 16 C -0.044 4.044 17 H 0.079 0.921 18 H 0.163 0.837 19 H 0.095 0.905 20 H 0.130 0.870 21 H 0.104 0.896 22 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.312 -7.593 1.505 7.747 hybrid contribution 1.070 -0.232 0.149 1.105 sum 0.758 -7.825 1.654 8.034 Atomic orbital electron populations 1.70121 1.06726 1.27228 1.35329 1.25804 0.94750 1.00337 0.93518 0.86390 0.80319 0.81788 0.78550 1.19986 1.20551 1.18925 1.18407 0.93757 0.88063 1.48624 0.90035 1.18382 0.85529 0.91228 0.95265 1.21773 0.90035 0.88088 1.33823 1.46145 1.08717 1.05060 1.62045 1.23155 0.77997 0.89201 1.08116 1.71653 1.15799 1.05062 1.24273 1.86905 1.28368 1.23286 1.80374 1.24085 0.93241 0.86081 0.99616 1.22730 0.96012 0.83392 1.02269 0.92103 0.83660 0.90470 0.87007 0.89620 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.80 11.96 55.53 0.66 -22.14 14 2 C 0.08 2.10 5.49 -17.35 -0.10 2.00 14 3 Si 0.90 20.31 29.56 -169.99 -5.03 15.29 14 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 14 7 C -0.45 -13.16 9.36 -37.96 -0.36 -13.52 14 8 H 0.08 2.20 7.85 -52.49 -0.41 1.78 14 9 C 0.22 6.48 6.68 -84.67 -0.57 5.92 14 10 C -0.21 -5.56 12.12 -15.33 -0.19 -5.74 14 11 N -0.51 -12.03 3.74 -115.52 -0.43 -12.46 14 12 C 0.31 8.21 9.38 -88.18 -0.83 7.38 14 13 N -0.43 -13.21 9.56 -11.89 -0.11 -13.32 14 14 O -0.28 -6.23 11.17 -19.45 -0.22 -6.45 14 15 C 0.05 0.69 8.07 38.03 0.31 0.99 14 16 C 0.08 1.27 8.11 -2.70 -0.02 1.25 14 17 H 0.27 7.27 8.30 -40.82 -0.34 6.93 14 18 H 0.15 3.36 8.06 -52.49 -0.42 2.94 14 19 H 0.08 1.01 8.14 -51.93 -0.42 0.59 14 20 H 0.11 1.15 8.14 -51.93 -0.42 0.73 14 21 H 0.09 1.13 8.14 -51.93 -0.42 0.70 14 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 14 LS Contribution 203.27 15.07 3.06 3.06 Total: -1.00 -34.72 203.27 -5.46 -40.18 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -1.66 Total: -2.45 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.74 Total: -1.71 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.12 Total: -47.92 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.22 Total: -6.45 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -34.72 -5.46 -40.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408692.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.063 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds