Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47128 * 2 1 4 4 H 1.09003 * 109.46652 * 305.59862 * 3 2 1 5 5 C 1.50698 * 109.47009 * 65.59842 * 3 2 1 6 6 H 1.08003 * 120.00282 * 28.14219 * 5 3 2 7 7 C 1.37882 * 119.99915 * 208.14259 * 5 3 2 8 8 N 1.31516 * 119.99816 * 6.18408 * 7 5 3 9 9 Si 1.86790 * 120.00179 * 186.18308 * 7 5 3 10 10 H 1.48504 * 109.47380 * 59.99718 * 9 7 5 11 11 H 1.48505 * 109.47425 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47332 * 300.00161 * 9 7 5 13 13 C 1.50697 * 109.46979 * 185.59673 * 3 2 1 14 14 C 1.34520 * 125.78597 * 120.00122 * 13 3 2 15 15 C 1.41381 * 106.83833 * 180.02562 * 14 13 3 16 16 C 1.34516 * 106.84153 * 0.02562 * 15 14 13 17 17 O 1.34297 * 125.79406 * 300.02329 * 13 3 2 18 18 H 1.08996 * 109.47473 * 174.02603 * 1 2 3 19 19 H 1.08998 * 109.47017 * 294.02437 * 1 2 3 20 20 H 1.08999 * 109.47030 * 54.02526 * 1 2 3 21 21 H 1.08996 * 109.47537 * 239.99812 * 2 1 3 22 22 H 1.09002 * 109.47005 * 119.99869 * 2 1 3 23 23 H 0.96995 * 120.00094 * 180.02562 * 8 7 5 24 24 H 1.07999 * 126.57963 * 359.97438 * 14 13 3 25 25 H 1.08001 * 126.58026 * 180.02562 * 15 14 13 26 26 H 1.07998 * 125.78845 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5971 1.9845 -0.8357 5 6 1.6540 2.1118 1.2939 6 1 1.5282 1.5225 2.1902 7 6 1.4615 3.4765 1.3335 8 7 1.4947 4.1778 0.2214 9 14 1.1535 4.3293 2.9666 10 1 2.3113 4.1040 3.8689 11 1 0.9800 5.7866 2.7392 12 1 -0.0751 3.7754 3.5904 13 6 3.5406 1.4448 -0.1386 14 6 4.2378 2.0220 -1.1337 15 6 5.6055 1.7811 -0.8687 16 6 5.6623 1.0706 0.2721 17 8 4.4086 0.8705 0.7102 18 1 -0.3634 -1.0220 -0.1069 19 1 -0.3633 0.4184 0.9386 20 1 -0.3633 0.6037 -0.8317 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.3596 5.1379 0.2493 24 1 3.8308 2.5646 -1.9742 25 1 6.4439 2.1053 -1.4674 26 1 6.5632 0.7215 0.7545 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328087.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -22.780053 kcal Electronic energy + Delta-G solvation = -10719.111409 eV Core-core repulsion = 8763.216110 eV Total energy + Delta-G solvation = -1955.895299 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.12426 -36.84739 -33.86978 -33.55705 -30.72875 -28.06530 -25.54438 -22.53043 -22.09989 -20.89374 -18.76149 -17.73313 -16.66819 -16.39485 -15.32738 -15.23462 -14.37398 -13.93208 -13.50752 -13.45757 -13.11234 -12.89395 -12.82785 -12.29663 -12.19864 -11.80582 -11.29246 -11.03816 -10.63160 -10.57349 -8.99774 -8.17748 -6.28235 1.19550 1.39838 1.41867 1.48675 1.99782 2.39948 2.54401 3.16289 4.21198 4.36144 4.40969 4.46861 4.64135 4.80589 5.09173 5.12144 5.21761 5.27545 5.39490 5.53628 5.59908 5.69230 5.77250 5.89846 6.21061 6.64896 6.83116 7.38385 8.89085 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.017862 C = 0.013958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.100148 B = 1567.233993 C = 2005.597164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.098 3.902 4 H 0.055 0.945 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.036 3.964 14 C -0.271 4.271 15 C -0.219 4.219 16 C -0.081 4.081 17 O -0.195 6.195 18 H 0.066 0.934 19 H 0.047 0.953 20 H 0.041 0.959 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.264 0.736 24 H 0.127 0.873 25 H 0.165 0.835 26 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -5.145 -0.088 6.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.080 3.920 4 H 0.073 0.927 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.015 4.015 14 C -0.291 4.291 15 C -0.238 4.238 16 C -0.148 4.148 17 O -0.092 6.092 18 H 0.085 0.915 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.145 0.855 25 H 0.183 0.817 26 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.623 -5.116 0.095 6.269 hybrid contribution 0.065 1.055 0.415 1.135 sum 3.688 -4.061 0.511 5.509 Atomic orbital electron populations 1.21528 0.94787 1.00713 1.01441 1.21472 0.96978 0.95900 0.99883 1.17732 0.81686 0.94252 0.98373 0.92689 1.21202 1.46755 0.92592 0.95283 0.92662 1.25759 0.94454 0.98399 0.99471 1.70025 1.49823 1.07314 1.28037 0.85717 0.78983 0.77422 0.80270 1.20216 1.20841 1.18764 1.23957 0.94566 0.95217 0.87793 1.21618 0.94459 1.09717 1.03279 1.22005 0.96868 1.04861 1.00065 1.24639 0.86481 1.05546 0.98086 1.83983 1.16530 1.61814 1.46825 0.91491 0.93432 0.93961 0.93230 0.93352 0.92746 0.85501 0.81703 0.74855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.63 71.98 0.69 -4.14 15 2 C -0.10 -4.45 5.37 30.60 0.16 -4.28 15 3 C 0.10 5.02 2.24 -12.28 -0.03 4.99 15 4 H 0.06 3.09 7.39 -2.39 -0.02 3.07 15 5 C -0.52 -28.69 7.40 25.60 0.19 -28.50 15 6 H 0.06 3.02 7.82 -2.91 -0.02 2.99 15 7 C 0.02 1.08 5.45 84.66 0.46 1.54 15 8 N -0.91 -53.31 12.87 21.45 0.28 -53.04 15 9 Si 0.95 43.95 29.54 68.60 2.03 45.97 15 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 15 13 C 0.04 1.78 5.81 24.83 0.14 1.93 15 14 C -0.27 -12.65 10.78 22.19 0.24 -12.41 15 15 C -0.22 -8.37 10.91 22.19 0.24 -8.12 15 16 C -0.08 -2.98 12.09 66.97 0.81 -2.17 15 17 O -0.19 -8.99 10.65 -2.38 -0.03 -9.02 15 18 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 19 H 0.05 1.91 7.60 -2.39 -0.02 1.89 15 20 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 24 H 0.13 5.93 8.06 -2.91 -0.02 5.91 15 25 H 0.17 5.00 8.06 -2.91 -0.02 4.97 15 26 H 0.24 5.83 8.06 -2.91 -0.02 5.80 15 Total: -1.00 -62.48 231.92 6.34 -56.15 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.14 Total: 11.12 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 2.92 Total: -51.18 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.28 Total: -53.04 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.03 Total: -9.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.48 6.34 -56.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328087.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.366 kcal (2) G-P(sol) polarization free energy of solvation -62.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds