Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.50699 * 109.47265 * 64.99823 * 3 2 1 14 14 C 1.34506 * 125.78983 * 239.99958 * 13 3 2 15 15 C 1.41384 * 106.84363 * 180.02562 * 14 13 3 16 16 C 1.34511 * 106.84034 * 359.97438 * 15 14 13 17 17 O 1.34306 * 125.78945 * 59.69471 * 13 3 2 18 18 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 20 20 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 21 21 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 22 22 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 24 24 H 1.08003 * 126.58250 * 0.03631 * 14 13 3 25 25 H 1.08004 * 126.58323 * 179.97438 * 15 14 13 26 26 H 1.08004 * 125.79287 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5987 1.5453 -0.1935 11 1 6.4962 -0.5190 -1.4623 12 1 6.4000 1.6157 -2.6090 13 6 1.6412 2.1163 1.2877 14 6 0.8696 3.2127 1.3956 15 6 0.7533 3.4976 2.7755 16 6 1.4604 2.5579 3.4284 17 8 1.9913 1.7205 2.5224 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3635 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.8293 -0.0604 -2.9501 24 1 0.4240 3.7687 0.5839 25 1 0.2025 4.3133 3.2202 26 1 1.5775 2.4860 4.4997 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328089.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -3.550104 kcal Electronic energy + Delta-G solvation = -10713.891322 eV Core-core repulsion = 8758.829896 eV Total energy + Delta-G solvation = -1955.061426 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.65731 -35.02892 -32.11960 -31.64457 -29.02403 -26.58310 -23.23412 -21.12548 -20.66206 -19.06539 -16.68003 -16.12275 -14.98597 -14.68469 -13.63967 -13.13908 -12.84021 -12.09621 -11.97011 -11.78876 -11.58701 -11.19033 -10.84482 -10.66181 -10.08846 -9.76359 -9.54736 -9.17997 -9.04580 -8.42761 -7.47257 -6.07016 -4.14531 2.66850 3.27848 3.35537 3.40302 3.49178 3.98880 4.40424 5.23001 5.61747 5.75192 5.96164 6.23277 6.29407 6.48854 6.62593 6.64585 6.90200 6.98244 7.11568 7.19875 7.36974 7.60869 7.76520 8.00933 8.11872 8.33629 8.86869 9.50075 10.97901 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.014596 C = 0.012256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.472376 B = 1917.918581 C = 2283.982533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.113 3.887 4 H 0.058 0.942 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.069 3.931 14 C -0.264 4.264 15 C -0.211 4.211 16 C -0.086 4.086 17 O -0.171 6.171 18 H 0.035 0.965 19 H 0.036 0.964 20 H 0.045 0.955 21 H 0.101 0.899 22 H 0.038 0.962 23 H 0.262 0.738 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 1.918 5.501 6.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.095 3.905 4 H 0.076 0.924 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.018 3.982 14 C -0.283 4.283 15 C -0.230 4.230 16 C -0.153 4.153 17 O -0.066 6.066 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.119 0.881 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.154 0.846 25 H 0.152 0.848 26 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.412 1.577 5.395 6.575 hybrid contribution 0.777 0.320 -0.007 0.841 sum -2.634 1.896 5.388 6.290 Atomic orbital electron populations 1.21850 0.98992 0.99425 1.00209 1.21617 0.91885 0.98963 1.03065 1.17736 0.96575 0.92189 0.84009 0.92412 1.21094 0.90279 1.37940 1.05774 0.92242 1.24940 0.98531 0.94942 0.95427 1.69869 1.34959 1.38435 1.09462 0.86441 0.85203 0.77798 0.78071 1.19708 1.20846 1.20889 1.23721 0.94176 0.95015 0.85333 1.21456 1.08631 1.01871 0.96391 1.21641 1.05156 1.01948 0.94302 1.23722 1.02783 0.94066 0.94718 1.84069 1.59650 1.47223 1.15695 0.94543 0.94491 0.93546 0.88053 0.94335 0.92759 0.84589 0.84812 0.79531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.73 37.16 0.36 -2.65 15 2 C -0.12 -2.83 5.23 -26.73 -0.14 -2.97 15 3 C 0.11 2.88 2.18 -92.92 -0.20 2.68 15 4 H 0.06 1.54 8.10 -51.93 -0.42 1.12 15 5 C -0.51 -14.27 8.55 -34.44 -0.29 -14.57 15 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 15 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 15 8 N -0.89 -24.80 11.29 55.43 0.63 -24.18 15 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 13 C 0.07 1.61 4.74 -35.63 -0.17 1.44 15 14 C -0.26 -5.52 10.78 -39.70 -0.43 -5.95 15 15 C -0.21 -3.83 10.91 -39.70 -0.43 -4.26 15 16 C -0.09 -1.55 12.09 29.41 0.36 -1.20 15 17 O -0.17 -3.84 10.65 5.69 0.06 -3.78 15 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.04 0.73 7.38 -51.93 -0.38 0.35 15 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.10 2.66 5.95 -51.93 -0.31 2.35 15 22 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 24 H 0.14 2.63 8.06 -52.48 -0.42 2.21 15 25 H 0.13 1.98 8.06 -52.48 -0.42 1.55 15 26 H 0.19 2.51 8.06 -52.48 -0.42 2.09 15 LS Contribution 228.38 15.07 3.44 3.44 Total: -1.00 -28.68 228.38 -5.13 -33.81 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.19 Total: 0.32 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -1.04 Total: -25.84 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.63 Total: -24.18 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.06 Total: -3.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.68 -5.13 -33.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328089.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.256 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds