Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.50699 * 109.47265 * 64.99823 * 3 2 1 14 14 C 1.34506 * 125.78983 * 239.99958 * 13 3 2 15 15 C 1.41384 * 106.84363 * 180.02562 * 14 13 3 16 16 C 1.34511 * 106.84034 * 359.97438 * 15 14 13 17 17 O 1.34306 * 125.78945 * 59.69471 * 13 3 2 18 18 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 20 20 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 21 21 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 22 22 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 24 24 H 1.08003 * 126.58250 * 0.03631 * 14 13 3 25 25 H 1.08004 * 126.58323 * 179.97438 * 15 14 13 26 26 H 1.08004 * 125.79287 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5987 1.5453 -0.1935 11 1 6.4962 -0.5190 -1.4623 12 1 6.4000 1.6157 -2.6090 13 6 1.6412 2.1163 1.2877 14 6 0.8696 3.2127 1.3956 15 6 0.7533 3.4976 2.7755 16 6 1.4604 2.5579 3.4284 17 8 1.9913 1.7205 2.5224 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3635 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.8293 -0.0604 -2.9501 24 1 0.4240 3.7687 0.5839 25 1 0.2025 4.3133 3.2202 26 1 1.5775 2.4860 4.4997 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328089.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -19.948760 kcal Electronic energy + Delta-G solvation = -10714.602421 eV Core-core repulsion = 8758.829896 eV Total energy + Delta-G solvation = -1955.772525 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.25068 -36.95456 -33.85655 -33.49569 -30.71654 -28.42900 -25.17129 -22.77872 -22.31063 -20.77333 -18.58989 -17.87900 -16.70661 -16.54515 -15.43885 -14.88250 -14.64222 -13.69741 -13.58250 -13.51885 -13.24737 -13.10235 -12.69094 -12.52917 -12.02406 -11.66618 -11.41506 -11.11850 -10.64341 -10.50159 -9.08905 -8.14827 -6.30770 1.11082 1.39701 1.41642 1.53548 1.91934 2.41682 2.46314 3.11288 4.17126 4.33095 4.38172 4.54583 4.57904 4.74422 5.01759 5.09626 5.17458 5.27305 5.36391 5.44304 5.57708 5.73060 5.85814 6.00439 6.22852 6.56791 6.74465 7.36826 8.88517 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.014596 C = 0.012256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.472376 B = 1917.918581 C = 2283.982533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.113 3.887 4 H 0.035 0.965 5 C -0.537 4.537 6 H 0.044 0.956 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.275 1.275 13 C 0.027 3.973 14 C -0.262 4.262 15 C -0.213 4.213 16 C -0.076 4.076 17 O -0.197 6.197 18 H 0.058 0.942 19 H 0.041 0.959 20 H 0.047 0.953 21 H 0.076 0.924 22 H 0.027 0.973 23 H 0.266 0.734 24 H 0.144 0.856 25 H 0.173 0.827 26 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 2.457 6.732 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C 0.095 3.905 4 H 0.052 0.948 5 C -0.574 4.574 6 H 0.062 0.938 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.200 1.200 12 H -0.200 1.200 13 C -0.024 4.024 14 C -0.281 4.281 15 C -0.232 4.232 16 C -0.142 4.142 17 O -0.093 6.093 18 H 0.077 0.923 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.094 0.906 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.162 0.838 25 H 0.190 0.810 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.660 2.119 6.622 7.857 hybrid contribution 0.815 0.198 -0.318 0.896 sum -2.845 2.317 6.304 7.294 Atomic orbital electron populations 1.21706 0.96098 1.00964 1.00479 1.21457 0.94462 0.97902 1.01101 1.17488 0.95202 0.92782 0.85043 0.94756 1.21315 0.91857 1.38471 1.05795 0.93808 1.25674 1.02803 0.94456 0.95035 1.69970 1.36568 1.38555 1.09742 0.85497 0.80028 0.78075 0.78032 1.19842 1.20019 1.20008 1.23300 0.97078 0.96788 0.85227 1.21763 1.07232 1.00672 0.98411 1.22037 1.05421 1.03050 0.92721 1.24751 1.00756 0.92544 0.96120 1.84025 1.60637 1.48721 1.15944 0.92327 0.93969 0.93414 0.90599 0.95425 0.92445 0.83827 0.80980 0.74825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.73 71.98 0.70 -4.76 15 2 C -0.11 -5.47 5.23 30.59 0.16 -5.31 15 3 C 0.11 5.93 2.18 -12.29 -0.03 5.90 15 4 H 0.03 1.91 8.10 -2.39 -0.02 1.89 15 5 C -0.54 -30.69 8.55 25.60 0.22 -30.47 15 6 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 7 C 0.02 1.11 5.29 84.66 0.45 1.56 15 8 N -0.91 -51.66 11.29 21.45 0.24 -51.42 15 9 Si 0.96 43.95 29.54 68.60 2.03 45.98 15 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 13 C 0.03 1.24 4.74 24.83 0.12 1.36 15 14 C -0.26 -10.62 10.78 22.19 0.24 -10.38 15 15 C -0.21 -7.05 10.91 22.19 0.24 -6.81 15 16 C -0.08 -2.51 12.09 66.97 0.81 -1.70 15 17 O -0.20 -8.69 10.65 -2.56 -0.03 -8.72 15 18 H 0.06 2.07 8.14 -2.38 -0.02 2.05 15 19 H 0.04 1.64 7.38 -2.39 -0.02 1.62 15 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.08 4.10 5.95 -2.39 -0.01 4.08 15 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 24 H 0.14 5.44 8.06 -2.91 -0.02 5.41 15 25 H 0.17 4.27 8.06 -2.91 -0.02 4.24 15 26 H 0.24 5.17 8.06 -2.91 -0.02 5.15 15 Total: -1.00 -62.16 228.38 6.30 -55.86 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.15 Total: 8.91 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 2.91 Total: -50.61 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.24 Total: -51.42 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.03 Total: -8.72 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -62.16 6.30 -55.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328089.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.911 kcal (2) G-P(sol) polarization free energy of solvation -62.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds