Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47265 * 2 1 4 4 C 1.50693 * 109.47166 * 120.00086 * 2 1 3 5 5 H 1.07998 * 119.99857 * 114.48657 * 4 2 1 6 6 C 1.37878 * 120.00171 * 294.48684 * 4 2 1 7 7 N 1.31513 * 119.99918 * 164.75413 * 6 4 2 8 8 Si 1.86799 * 119.99933 * 344.75380 * 6 4 2 9 9 H 1.48500 * 109.46876 * 269.99865 * 8 6 4 10 10 H 1.48497 * 109.47323 * 29.99807 * 8 6 4 11 11 H 1.48498 * 109.47176 * 149.99984 * 8 6 4 12 12 C 1.50704 * 109.47303 * 240.00425 * 2 1 3 13 13 C 1.39871 * 126.03700 * 300.02687 * 12 2 1 14 14 N 1.30832 * 108.19952 * 179.97438 * 13 12 2 15 15 N 1.40083 * 108.21056 * 359.97438 * 14 13 12 16 16 C 1.46496 * 126.03884 * 179.97438 * 15 14 13 17 17 C 1.34948 * 107.91954 * 359.75743 * 15 14 13 18 18 H 1.09003 * 109.46866 * 293.69902 * 1 2 3 19 19 H 1.09007 * 109.47044 * 53.69527 * 1 2 3 20 20 H 1.08997 * 109.47012 * 173.69932 * 1 2 3 21 21 H 0.96993 * 120.00101 * 354.90065 * 7 6 4 22 22 H 1.08000 * 125.89690 * 359.97438 * 13 12 2 23 23 H 1.09001 * 109.46846 * 89.97816 * 16 15 14 24 24 H 1.08997 * 109.47216 * 209.97293 * 16 15 14 25 25 H 1.09000 * 109.47259 * 329.97389 * 16 15 14 26 26 H 1.08001 * 126.12376 * 180.24435 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5778 -1.6375 1.1337 6 6 1.7955 -0.1768 2.4795 7 7 1.9576 -0.9190 3.5530 8 14 1.2446 1.6002 2.6469 9 1 2.4359 2.4781 2.7709 10 1 0.4640 1.9917 1.4459 11 1 0.3960 1.7434 3.8571 12 6 2.0324 -0.7103 -1.2305 13 6 1.7731 -2.0406 -1.5763 14 7 2.3769 -2.2935 -2.7090 15 7 3.0400 -1.1304 -3.1209 16 6 3.8395 -0.9795 -4.3392 17 6 2.8083 -0.1720 -2.1996 18 1 -0.3633 0.4131 0.9410 19 1 -0.3633 0.6085 -0.8282 20 1 -0.3633 -1.0214 -0.1128 21 1 2.1714 -1.8608 3.4638 22 1 1.1774 -2.7384 -1.0065 23 1 3.1986 -0.6461 -5.1554 24 1 4.6247 -0.2428 -4.1697 25 1 4.2901 -1.9374 -4.5990 26 1 3.1784 0.8422 -2.2289 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328123.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 70.879968 kcal Electronic energy + Delta-G solvation = -10534.104342 eV Core-core repulsion = 8614.563198 eV Total energy + Delta-G solvation = -1919.541145 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.47774 -34.64450 -32.47697 -31.20165 -28.69596 -25.94920 -24.52688 -21.47248 -20.41221 -18.90747 -17.26007 -15.99085 -14.93145 -14.12260 -13.78643 -13.35105 -12.65663 -12.56985 -12.40587 -11.94814 -11.73028 -11.09369 -10.74298 -10.41833 -10.24134 -9.55349 -9.48683 -8.81295 -8.73405 -8.20873 -7.54700 -6.31368 -3.95829 2.51107 3.08859 3.47334 3.49176 3.65008 3.66384 4.58539 4.91430 5.31025 5.35973 5.45950 5.52003 5.73142 6.29114 6.40717 6.53531 6.63347 6.88003 6.94336 7.24327 7.38761 7.64353 7.66083 8.23957 8.38531 8.49133 9.01844 9.71928 11.03969 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.066059 B = 0.011960 C = 0.011477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.762879 B = 2340.510447 C = 2439.174574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.080 3.920 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.913 5.913 8 Si 1.043 2.957 9 H -0.289 1.289 10 H -0.270 1.270 11 H -0.288 1.288 12 C -0.168 4.168 13 C 0.059 3.941 14 N -0.318 5.318 15 N -0.394 5.394 16 C 0.111 3.889 17 C 0.019 3.981 18 H 0.047 0.953 19 H 0.020 0.980 20 H 0.042 0.958 21 H 0.267 0.733 22 H 0.177 0.823 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 3.258 -11.899 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.624 4.624 5 H 0.074 0.926 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.872 3.128 9 H -0.216 1.216 10 H -0.195 1.195 11 H -0.214 1.214 12 C -0.179 4.179 13 C -0.127 4.127 14 N -0.140 5.140 15 N -0.179 5.179 16 C -0.031 4.031 17 C -0.124 4.124 18 H 0.066 0.934 19 H 0.040 0.960 20 H 0.061 0.939 21 H 0.077 0.923 22 H 0.194 0.806 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.809 3.581 -11.813 12.370 hybrid contribution 0.360 -0.627 -0.481 0.869 sum 1.170 2.954 -12.294 12.698 Atomic orbital electron populations 1.22134 0.98589 0.99647 0.98891 1.17567 0.91581 0.94703 0.90212 0.95766 1.22005 1.39158 1.10533 0.90682 0.92623 1.25757 0.94436 1.05274 0.92053 1.70797 1.44892 1.08219 1.30836 0.84125 0.77048 0.75801 0.75874 1.21566 1.19502 1.21442 1.20553 1.03901 0.94658 0.98805 1.23706 0.99045 0.96809 0.93148 1.77163 1.14520 1.06211 1.16081 1.48230 1.41704 1.08678 1.19252 1.21620 0.94159 1.03206 0.84161 1.22233 1.03099 0.95383 0.91732 0.93360 0.96049 0.93905 0.92316 0.80635 0.91762 0.90215 0.90118 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.43 37.16 0.31 -2.67 15 2 C 0.08 1.91 2.21 -92.92 -0.21 1.70 15 3 H 0.02 0.57 6.74 -51.93 -0.35 0.22 15 4 C -0.59 -16.51 8.71 -34.44 -0.30 -16.81 15 5 H 0.06 1.72 7.93 -52.49 -0.42 1.30 15 6 C 0.03 0.83 5.33 -17.82 -0.09 0.73 15 7 N -0.91 -28.27 13.70 55.43 0.76 -27.51 15 8 Si 1.04 25.02 26.17 -169.99 -4.45 20.58 15 9 H -0.29 -6.73 7.11 56.52 0.40 -6.32 15 10 H -0.27 -5.88 5.54 56.52 0.31 -5.57 15 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 12 C -0.17 -3.69 4.75 -105.05 -0.50 -4.19 15 13 C 0.06 1.25 11.36 -17.37 -0.20 1.06 15 14 N -0.32 -6.47 12.57 30.62 0.39 -6.09 15 15 N -0.39 -6.97 4.01 -68.17 -0.27 -7.25 15 16 C 0.11 1.29 11.47 59.84 0.69 1.98 15 17 C 0.02 0.35 11.38 -17.22 -0.20 0.15 15 18 H 0.05 1.09 5.06 -51.93 -0.26 0.82 15 19 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 15 20 H 0.04 0.92 7.84 -51.93 -0.41 0.51 15 21 H 0.27 8.27 8.73 -40.82 -0.36 7.91 15 22 H 0.18 3.57 8.06 -52.49 -0.42 3.15 15 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.16 2.52 8.06 -52.49 -0.42 2.10 15 LS Contribution 224.83 15.07 3.39 3.39 Total: -1.00 -32.49 224.83 -3.90 -36.39 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -3.21 Total: -1.46 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.49 Total: -18.05 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.87 Total: -40.84 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.45 Total: 20.58 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -32.49 -3.90 -36.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328123.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.271 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds