Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47265 * 2 1 4 4 C 1.50693 * 109.47166 * 120.00086 * 2 1 3 5 5 H 1.07998 * 119.99857 * 114.48657 * 4 2 1 6 6 C 1.37878 * 120.00171 * 294.48684 * 4 2 1 7 7 N 1.31513 * 119.99918 * 164.75413 * 6 4 2 8 8 Si 1.86799 * 119.99933 * 344.75380 * 6 4 2 9 9 H 1.48500 * 109.46876 * 269.99865 * 8 6 4 10 10 H 1.48497 * 109.47323 * 29.99807 * 8 6 4 11 11 H 1.48498 * 109.47176 * 149.99984 * 8 6 4 12 12 C 1.50704 * 109.47303 * 240.00425 * 2 1 3 13 13 C 1.39871 * 126.03700 * 300.02687 * 12 2 1 14 14 N 1.30832 * 108.19952 * 179.97438 * 13 12 2 15 15 N 1.40083 * 108.21056 * 359.97438 * 14 13 12 16 16 C 1.46496 * 126.03884 * 179.97438 * 15 14 13 17 17 C 1.34948 * 107.91954 * 359.75743 * 15 14 13 18 18 H 1.09003 * 109.46866 * 293.69902 * 1 2 3 19 19 H 1.09007 * 109.47044 * 53.69527 * 1 2 3 20 20 H 1.08997 * 109.47012 * 173.69932 * 1 2 3 21 21 H 0.96993 * 120.00101 * 354.90065 * 7 6 4 22 22 H 1.08000 * 125.89690 * 359.97438 * 13 12 2 23 23 H 1.09001 * 109.46846 * 89.97816 * 16 15 14 24 24 H 1.08997 * 109.47216 * 209.97293 * 16 15 14 25 25 H 1.09000 * 109.47259 * 329.97389 * 16 15 14 26 26 H 1.08001 * 126.12376 * 180.24435 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5778 -1.6375 1.1337 6 6 1.7955 -0.1768 2.4795 7 7 1.9576 -0.9190 3.5530 8 14 1.2446 1.6002 2.6469 9 1 2.4359 2.4781 2.7709 10 1 0.4640 1.9917 1.4459 11 1 0.3960 1.7434 3.8571 12 6 2.0324 -0.7103 -1.2305 13 6 1.7731 -2.0406 -1.5763 14 7 2.3769 -2.2935 -2.7090 15 7 3.0400 -1.1304 -3.1209 16 6 3.8395 -0.9795 -4.3392 17 6 2.8083 -0.1720 -2.1996 18 1 -0.3633 0.4131 0.9410 19 1 -0.3633 0.6085 -0.8282 20 1 -0.3633 -1.0214 -0.1128 21 1 2.1714 -1.8608 3.4638 22 1 1.1774 -2.7384 -1.0065 23 1 3.1986 -0.6461 -5.1554 24 1 4.6247 -0.2428 -4.1697 25 1 4.2901 -1.9374 -4.5990 26 1 3.1784 0.8422 -2.2289 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328123.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 48.311006 kcal Electronic energy + Delta-G solvation = -10535.083006 eV Core-core repulsion = 8614.563198 eV Total energy + Delta-G solvation = -1920.519808 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.97525 -36.49451 -34.09169 -33.04355 -30.22147 -27.24522 -26.57794 -23.25129 -21.86737 -20.60181 -19.34125 -17.46236 -16.22291 -15.94536 -15.29342 -15.09033 -14.40406 -14.15274 -13.57675 -13.53777 -13.32923 -12.92242 -12.43971 -12.20651 -12.01546 -11.29756 -11.25561 -10.88810 -10.39163 -10.20821 -9.17182 -8.54757 -6.25130 1.03436 1.56188 1.61950 1.80102 1.83427 2.03160 2.60787 3.17545 3.76574 4.14285 4.39720 4.48451 4.64339 4.69036 4.70538 4.96100 5.00825 5.08786 5.26242 5.44346 5.73808 5.89246 6.11931 6.17900 6.35961 6.68231 6.83768 7.52735 8.73727 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.066059 B = 0.011960 C = 0.011477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.762879 B = 2340.510447 C = 2439.174574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.583 4.583 5 H 0.009 0.991 6 C -0.026 4.026 7 N -0.949 5.949 8 Si 1.086 2.914 9 H -0.275 1.275 10 H -0.230 1.230 11 H -0.293 1.293 12 C -0.213 4.213 13 C 0.038 3.962 14 N -0.336 5.336 15 N -0.384 5.384 16 C 0.097 3.903 17 C 0.039 3.961 18 H 0.042 0.958 19 H 0.051 0.949 20 H 0.034 0.966 21 H 0.248 0.752 22 H 0.167 0.833 23 H 0.088 0.912 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 5.672 -14.147 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 H 0.056 0.944 4 C -0.621 4.621 5 H 0.027 0.973 6 C -0.222 4.222 7 N -0.586 5.586 8 Si 0.907 3.093 9 H -0.201 1.201 10 H -0.153 1.153 11 H -0.219 1.219 12 C -0.224 4.224 13 C -0.146 4.146 14 N -0.159 5.159 15 N -0.168 5.168 16 C -0.043 4.043 17 C -0.106 4.106 18 H 0.061 0.939 19 H 0.070 0.930 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.184 0.816 23 H 0.107 0.893 24 H 0.130 0.870 25 H 0.106 0.894 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.006 5.965 -14.118 15.360 hybrid contribution 0.412 -1.465 0.080 1.524 sum 1.418 4.500 -14.038 14.810 Atomic orbital electron populations 1.22050 0.97269 0.99930 0.99750 1.17458 0.92624 0.94783 0.89057 0.94415 1.22208 1.37882 1.08891 0.93149 0.97276 1.27313 0.94091 1.09080 0.91741 1.70943 1.48010 1.07503 1.32134 0.83634 0.77650 0.70775 0.77279 1.20053 1.15315 1.21914 1.20500 1.06920 0.95167 0.99787 1.23661 1.00004 0.97075 0.93906 1.77097 1.15153 1.07850 1.15815 1.48722 1.40465 1.07435 1.20212 1.22147 0.94854 1.04836 0.82440 1.22719 1.00712 0.96779 0.90425 0.93939 0.93001 0.94646 0.94291 0.81614 0.89308 0.86964 0.89447 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.43 71.98 0.61 -5.00 15 2 C 0.08 3.76 2.21 -12.29 -0.03 3.73 15 3 H 0.04 1.65 6.74 -2.39 -0.02 1.63 15 4 C -0.58 -33.52 8.71 25.60 0.22 -33.30 15 5 H 0.01 0.58 7.93 -2.91 -0.02 0.55 15 6 C -0.03 -1.53 5.33 84.66 0.45 -1.08 15 7 N -0.95 -60.76 13.70 21.45 0.29 -60.47 15 8 Si 1.09 49.21 26.17 68.60 1.80 51.01 15 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 10 H -0.23 -8.91 5.54 99.48 0.55 -8.36 15 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 15 12 C -0.21 -9.05 4.75 -20.14 -0.10 -9.15 15 13 C 0.04 1.63 11.36 85.24 0.97 2.60 15 14 N -0.34 -13.35 12.57 -57.03 -0.72 -14.07 15 15 N -0.38 -12.42 4.01 -369.58 -1.48 -13.90 15 16 C 0.10 1.84 11.47 127.77 1.47 3.31 15 17 C 0.04 1.33 11.38 83.54 0.95 2.28 15 18 H 0.04 1.81 5.06 -2.39 -0.01 1.80 15 19 H 0.05 1.86 8.14 -2.38 -0.02 1.84 15 20 H 0.03 1.50 7.84 -2.39 -0.02 1.48 15 21 H 0.25 16.27 8.73 -92.71 -0.81 15.46 15 22 H 0.17 7.13 8.06 -2.91 -0.02 7.11 15 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 24 H 0.11 1.46 8.14 -2.39 -0.02 1.45 15 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 26 H 0.20 5.15 8.06 -2.91 -0.02 5.13 15 Total: -1.00 -72.24 224.83 5.39 -66.84 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.96 Total: 7.19 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.54 Total: -36.60 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -1.91 Total: -88.44 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.80 Total: 51.01 kcal Total: -72.24 5.39 -66.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328123.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.155 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds