Wall clock time and date at job start Mon Mar 30 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.46941 * 2 1 4 4 C 1.50699 * 109.46887 * 119.99724 * 2 1 3 5 5 H 1.08007 * 119.99331 * 120.00384 * 4 2 1 6 6 C 1.37878 * 120.00418 * 299.99965 * 4 2 1 7 7 N 1.31510 * 119.99527 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46959 * 60.00084 * 8 6 4 10 10 H 1.48492 * 109.46898 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46749 * 300.00241 * 8 6 4 12 12 C 1.50698 * 109.47030 * 239.99949 * 2 1 3 13 13 C 1.40884 * 126.29437 * 270.02105 * 12 2 1 14 14 C 1.34850 * 107.42192 * 179.97438 * 13 12 2 15 15 N 1.36338 * 108.21433 * 359.97438 * 14 13 12 16 16 H 0.97003 * 125.63151 * 180.02562 * 15 14 13 17 17 C 1.34854 * 126.29050 * 90.00046 * 12 2 1 18 18 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46950 * 300.00269 * 1 2 3 20 20 H 1.09001 * 109.46876 * 59.99713 * 1 2 3 21 21 H 1.00901 * 111.00137 * 56.04908 * 3 2 1 22 22 H 1.00899 * 111.00174 * 179.97438 * 3 2 1 23 23 H 0.97000 * 119.99818 * 179.97438 * 7 6 4 24 24 H 1.08004 * 126.28899 * 359.96252 * 13 12 2 25 25 H 1.08001 * 125.89235 * 180.02562 * 14 13 12 26 26 H 1.08006 * 125.89018 * 359.75991 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0081 12 6 2.0324 -0.7104 -1.2304 13 6 2.3100 -2.0870 -1.3437 14 6 2.7349 -2.3108 -2.6038 15 7 2.7293 -1.1229 -3.2728 16 1 2.9892 -0.9944 -4.1985 17 6 2.2984 -0.1454 -2.4256 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.6442 1.9013 0.7814 22 1 3.0283 1.4120 0.0004 23 1 0.7082 1.1609 3.4843 24 1 2.2024 -2.8270 -0.5644 25 1 3.0282 -3.2664 -3.0127 26 1 2.1848 0.9003 -2.6710 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:30 Heat of formation + Delta-G solvation = 43.888053 kcal Electronic energy + Delta-G solvation = -10825.777059 eV Core-core repulsion = 8905.065457 eV Total energy + Delta-G solvation = -1920.711602 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.12637 -35.34692 -31.42341 -29.57426 -27.55470 -26.92954 -25.05293 -21.10032 -19.74324 -18.00583 -17.22021 -15.73367 -14.60932 -13.66031 -13.27792 -13.04053 -12.74707 -12.49562 -11.84454 -11.14442 -11.01328 -10.85763 -10.69821 -10.27765 -10.07750 -9.56467 -9.39847 -8.43882 -7.70626 -7.17059 -6.94174 -5.88367 -4.03474 3.14440 3.33464 3.38054 3.41493 4.08351 4.14022 4.47172 5.31081 5.79787 6.18905 6.44500 6.51966 6.77211 7.12904 7.22714 7.30381 7.35400 7.68057 7.89899 8.03273 8.06569 8.17824 8.38722 8.47618 8.95632 9.18223 9.34025 9.68190 11.06329 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056703 B = 0.014658 C = 0.012819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.685967 B = 1909.789201 C = 2183.654019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.290 3.710 3 N -0.848 5.848 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.892 3.108 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.110 4.110 13 C -0.180 4.180 14 C -0.051 4.051 15 N -0.576 5.576 16 H 0.401 0.599 17 C -0.028 4.028 18 H 0.026 0.974 19 H 0.080 0.920 20 H 0.013 0.987 21 H 0.352 0.648 22 H 0.311 0.689 23 H 0.261 0.739 24 H 0.128 0.872 25 H 0.148 0.852 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -2.426 -7.157 7.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.199 3.801 3 N -0.377 5.377 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.117 4.117 13 C -0.206 4.206 14 C -0.180 4.180 15 N -0.172 5.172 16 H 0.235 0.765 17 C -0.157 4.157 18 H 0.045 0.955 19 H 0.098 0.902 20 H 0.032 0.968 21 H 0.167 0.833 22 H 0.119 0.881 23 H 0.071 0.929 24 H 0.146 0.854 25 H 0.166 0.834 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.874 -2.213 -7.844 8.363 hybrid contribution 0.917 -0.831 1.464 1.917 sum 2.791 -3.043 -6.380 7.600 Atomic orbital electron populations 1.21653 0.97053 0.98752 1.00190 1.16735 0.91162 0.85106 0.87134 1.59423 1.11178 1.15611 1.51485 1.21939 1.30707 1.12765 0.91125 0.92609 1.24988 0.94778 0.95175 0.98857 1.69690 1.37209 1.23271 1.23483 0.86669 0.79052 0.79874 0.82413 1.20515 1.21434 1.20398 1.20057 1.03131 0.93296 0.95179 1.20887 1.07046 0.97166 0.95499 1.21610 1.12495 0.89449 0.94469 1.41884 1.55283 1.07845 1.12197 0.76482 1.21677 1.09230 0.93667 0.91111 0.95450 0.90162 0.96811 0.83267 0.88067 0.92853 0.85428 0.83411 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.49 37.16 0.32 -2.70 15 2 C 0.29 7.39 0.86 -133.90 -0.12 7.27 15 3 N -0.85 -20.68 8.43 -1.14 -0.01 -20.69 15 4 C -0.53 -14.44 7.91 -34.44 -0.27 -14.71 15 5 H 0.06 1.56 6.60 -52.48 -0.35 1.21 15 6 C 0.06 1.71 5.22 -17.82 -0.09 1.62 15 7 N -0.90 -24.70 9.57 55.43 0.53 -24.17 15 8 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 15 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 12 C -0.11 -2.53 4.88 -104.82 -0.51 -3.04 15 13 C -0.18 -3.86 9.75 -39.78 -0.39 -4.24 15 14 C -0.05 -0.89 11.94 -16.75 -0.20 -1.09 15 15 N -0.58 -9.42 6.07 -12.85 -0.08 -9.50 15 16 H 0.40 4.87 8.96 -40.82 -0.37 4.50 15 17 C -0.03 -0.56 11.37 -16.75 -0.19 -0.75 15 18 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.08 2.19 6.07 -51.93 -0.32 1.87 15 20 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 21 H 0.35 9.12 7.00 -39.29 -0.27 8.85 15 22 H 0.31 7.43 8.98 -39.29 -0.35 7.08 15 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.13 2.77 7.51 -52.48 -0.39 2.38 15 25 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 26 H 0.16 2.95 8.06 -52.48 -0.42 2.52 15 LS Contribution 221.19 15.07 3.33 3.33 Total: -1.00 -28.99 221.19 -5.58 -34.56 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -2.88 Total: 17.72 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.46 Total: -17.65 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.44 Total: -54.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.99 -5.58 -34.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.451 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds