Wall clock time and date at job start Mon Mar 30 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.46941 * 2 1 4 4 C 1.50699 * 109.46887 * 119.99724 * 2 1 3 5 5 H 1.08007 * 119.99331 * 120.00384 * 4 2 1 6 6 C 1.37878 * 120.00418 * 299.99965 * 4 2 1 7 7 N 1.31510 * 119.99527 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46959 * 60.00084 * 8 6 4 10 10 H 1.48492 * 109.46898 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46749 * 300.00241 * 8 6 4 12 12 C 1.50698 * 109.47030 * 239.99949 * 2 1 3 13 13 C 1.40884 * 126.29437 * 270.02105 * 12 2 1 14 14 C 1.34850 * 107.42192 * 179.97438 * 13 12 2 15 15 N 1.36338 * 108.21433 * 359.97438 * 14 13 12 16 16 H 0.97003 * 125.63151 * 180.02562 * 15 14 13 17 17 C 1.34854 * 126.29050 * 90.00046 * 12 2 1 18 18 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46950 * 300.00269 * 1 2 3 20 20 H 1.09001 * 109.46876 * 59.99713 * 1 2 3 21 21 H 1.00901 * 111.00137 * 56.04908 * 3 2 1 22 22 H 1.00899 * 111.00174 * 179.97438 * 3 2 1 23 23 H 0.97000 * 119.99818 * 179.97438 * 7 6 4 24 24 H 1.08004 * 126.28899 * 359.96252 * 13 12 2 25 25 H 1.08001 * 125.89235 * 180.02562 * 14 13 12 26 26 H 1.08006 * 125.89018 * 359.75991 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0081 12 6 2.0324 -0.7104 -1.2304 13 6 2.3100 -2.0870 -1.3437 14 6 2.7349 -2.3108 -2.6038 15 7 2.7293 -1.1229 -3.2728 16 1 2.9892 -0.9944 -4.1985 17 6 2.2984 -0.1454 -2.4256 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.6442 1.9013 0.7814 22 1 3.0283 1.4120 0.0004 23 1 0.7082 1.1609 3.4843 24 1 2.2024 -2.8270 -0.5644 25 1 3.0282 -3.2664 -3.0127 26 1 2.1848 0.9003 -2.6710 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:30 Heat of formation + Delta-G solvation = 23.511743 kcal Electronic energy + Delta-G solvation = -10826.660642 eV Core-core repulsion = 8905.065457 eV Total energy + Delta-G solvation = -1921.595185 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.63491 -37.27814 -33.43551 -31.17422 -29.21089 -28.80612 -27.14664 -22.91903 -21.25817 -19.60353 -18.90061 -17.73209 -16.55422 -15.57547 -14.99161 -14.83268 -14.22841 -14.19167 -13.55637 -13.09972 -12.87642 -12.74249 -12.56137 -12.25627 -12.10919 -11.55561 -11.31199 -10.52488 -9.24637 -9.00723 -8.66520 -7.93848 -6.16755 1.41301 1.42173 1.49566 1.68160 2.39447 2.49429 2.82202 3.20296 4.46400 4.66752 4.76161 4.81000 5.05842 5.18599 5.25995 5.48587 5.68999 5.74226 5.91601 6.03889 6.30376 6.45251 6.50288 6.88353 7.12699 7.22338 7.29086 7.59225 8.96759 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056703 B = 0.014658 C = 0.012819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.685967 B = 1909.789201 C = 2183.654019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.283 3.717 3 N -0.836 5.836 4 C -0.542 4.542 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.279 1.279 12 C -0.152 4.152 13 C -0.226 4.226 14 C -0.017 4.017 15 N -0.553 5.553 16 H 0.426 0.574 17 C -0.023 4.023 18 H 0.018 0.982 19 H 0.058 0.942 20 H 0.022 0.978 21 H 0.341 0.659 22 H 0.312 0.688 23 H 0.262 0.738 24 H 0.110 0.890 25 H 0.194 0.806 26 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -3.042 -8.454 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.191 3.809 3 N -0.363 5.363 4 C -0.582 4.582 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.204 1.204 12 C -0.159 4.159 13 C -0.251 4.251 14 C -0.148 4.148 15 N -0.150 5.150 16 H 0.265 0.735 17 C -0.154 4.154 18 H 0.037 0.963 19 H 0.077 0.923 20 H 0.041 0.959 21 H 0.155 0.845 22 H 0.121 0.879 23 H 0.071 0.929 24 H 0.129 0.871 25 H 0.211 0.789 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.713 -2.826 -9.183 9.984 hybrid contribution 0.665 -0.662 1.802 2.032 sum 3.379 -3.487 -7.381 8.835 Atomic orbital electron populations 1.21526 0.97785 0.97896 0.99448 1.16729 0.90754 0.85356 0.88022 1.59423 1.11134 1.15157 1.50580 1.22155 1.30836 1.12661 0.92521 0.93899 1.25608 0.95051 0.95885 1.01159 1.69793 1.37558 1.23886 1.23884 0.85783 0.78443 0.78759 0.79542 1.20363 1.20879 1.20441 1.19981 1.05942 0.94380 0.95566 1.20917 1.10377 0.96476 0.97378 1.22089 1.08869 0.91031 0.92844 1.41821 1.53422 1.06733 1.13050 0.73486 1.21654 1.08533 0.94517 0.90661 0.96275 0.92272 0.95920 0.84476 0.87920 0.92878 0.87138 0.78941 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 8.49 71.98 0.61 -4.99 15 2 C 0.28 14.53 0.86 2.04 0.00 14.53 15 3 N -0.84 -40.87 8.43 -157.51 -1.33 -42.20 15 4 C -0.54 -30.21 7.91 25.60 0.20 -30.01 15 5 H 0.04 2.44 6.60 -2.91 -0.02 2.43 15 6 C 0.02 1.21 5.22 84.66 0.44 1.65 15 7 N -0.91 -50.66 9.57 21.45 0.21 -50.45 15 8 Si 0.95 44.23 29.54 68.60 2.03 46.26 15 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 12 C -0.15 -6.91 4.88 -19.99 -0.10 -7.00 15 13 C -0.23 -9.48 9.75 22.14 0.22 -9.27 15 14 C -0.02 -0.54 11.94 83.21 0.99 0.45 15 15 N -0.55 -16.01 6.07 -194.56 -1.18 -17.19 15 16 H 0.43 8.32 8.96 -92.71 -0.83 7.49 15 17 C -0.02 -0.87 11.37 83.21 0.95 0.07 15 18 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 19 H 0.06 3.28 6.07 -2.39 -0.01 3.26 15 20 H 0.02 1.07 8.14 -2.39 -0.02 1.05 15 21 H 0.34 17.88 7.00 -89.69 -0.63 17.25 15 22 H 0.31 14.94 8.98 -89.69 -0.81 14.14 15 23 H 0.26 14.01 8.31 -92.71 -0.77 13.24 15 24 H 0.11 4.89 7.51 -2.91 -0.02 4.87 15 25 H 0.19 4.28 8.06 -2.91 -0.02 4.26 15 26 H 0.17 5.87 8.06 -2.91 -0.02 5.85 15 Total: -1.00 -61.90 221.19 1.98 -59.91 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -1.06 Total: 38.24 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 3.32 Total: -34.57 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -2.30 Total: -109.84 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.90 1.98 -59.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.425 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds