Wall clock time and date at job start Mon Mar 30 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34663 * 125.98886 * 2 1 4 4 N 1.36880 * 106.81873 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.40231 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46956 * 265.00174 * 5 4 3 7 7 H 1.08006 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00041 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00394 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47041 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47241 * 119.99981 * 10 8 6 13 13 H 1.48501 * 109.47381 * 240.00192 * 10 8 6 14 14 C 1.35042 * 107.20395 * 359.97438 * 4 3 2 15 15 C 1.50704 * 125.65148 * 180.26280 * 14 4 3 16 16 N 1.30504 * 108.69855 * 359.97438 * 14 4 3 17 17 H 1.08998 * 109.46953 * 269.99942 * 1 2 3 18 18 H 1.09001 * 109.46856 * 29.99576 * 1 2 3 19 19 H 1.08992 * 109.46997 * 149.99873 * 1 2 3 20 20 H 1.08005 * 126.59404 * 0.02562 * 3 2 1 21 21 H 1.08999 * 109.46910 * 24.99813 * 5 4 3 22 22 H 1.08995 * 109.47420 * 144.99984 * 5 4 3 23 23 H 0.96999 * 120.00276 * 180.02562 * 9 8 6 24 24 H 1.08995 * 109.46986 * 269.72073 * 15 14 4 25 25 H 1.08998 * 109.47073 * 29.71696 * 15 14 4 26 26 H 1.09005 * 109.46869 * 149.72001 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 0.0006 5 6 4.7997 1.4684 0.0013 6 6 5.2847 1.6505 -1.4138 7 1 4.7469 1.1945 -2.2319 8 6 6.4150 2.3992 -1.6642 9 7 7.0703 2.9541 -0.6680 10 14 7.0167 2.6243 -3.4183 11 1 6.1107 1.9040 -4.3486 12 1 7.0253 4.0702 -3.7569 13 1 8.3919 2.0783 -3.5439 14 6 3.5450 -0.7095 0.0015 15 6 4.7387 -1.6294 0.0080 16 7 2.2952 -1.0852 0.0020 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5138 19 1 -0.3633 -0.8899 -0.5138 20 1 1.9751 2.1201 0.0004 21 1 4.5725 2.4420 0.4357 22 1 5.5750 0.9794 0.5911 23 1 7.8653 3.4812 -0.8442 24 1 5.0283 -1.8560 -1.0180 25 1 5.5688 -1.1438 0.5210 26 1 4.4822 -2.5537 0.5258 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084403378.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:48 Heat of formation + Delta-G solvation = 38.457121 kcal Electronic energy + Delta-G solvation = -10481.750760 eV Core-core repulsion = 8560.803655 eV Total energy + Delta-G solvation = -1920.947105 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.17448 -34.18403 -32.35448 -31.35110 -28.79734 -27.28832 -24.78957 -22.89512 -19.59725 -18.90561 -16.80828 -15.74262 -14.62671 -14.37226 -13.57724 -13.14109 -12.76555 -12.51266 -12.05373 -11.88940 -11.69360 -11.66862 -11.36956 -11.01407 -10.89796 -10.34074 -9.88678 -9.16717 -8.71484 -8.46527 -7.36776 -6.34568 -4.42658 2.98352 3.15027 3.23520 3.29571 3.82037 3.98339 4.25578 5.00393 5.15856 5.68495 5.83257 5.96376 6.04546 6.10874 6.18516 6.29789 6.47798 6.55543 6.69811 6.93443 7.46807 7.58741 7.67546 7.80599 8.18036 8.65940 8.96290 9.25527 10.73705 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.055998 B = 0.011457 C = 0.010900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.896314 B = 2443.396318 C = 2568.180262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.031 4.031 3 C -0.053 4.053 4 N -0.423 5.423 5 C 0.231 3.769 6 C -0.540 4.540 7 H 0.065 0.935 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.199 3.801 15 C -0.057 4.057 16 N -0.511 5.511 17 H 0.057 0.943 18 H 0.060 0.940 19 H 0.060 0.940 20 H 0.161 0.839 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.268 0.732 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 -3.077 0.877 5.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.161 4.161 3 C -0.190 4.190 4 N -0.101 5.101 5 C 0.111 3.889 6 C -0.578 4.578 7 H 0.084 0.916 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.205 1.205 14 C -0.064 4.064 15 C -0.116 4.116 16 N -0.233 5.233 17 H 0.075 0.925 18 H 0.079 0.921 19 H 0.079 0.921 20 H 0.179 0.821 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.918 -3.659 0.930 6.200 hybrid contribution 0.756 1.271 -0.930 1.748 sum -4.162 -2.388 -0.001 4.798 Atomic orbital electron populations 1.19855 0.88765 1.01626 1.01062 1.20494 0.95840 0.89077 1.10715 1.22319 0.83925 0.99736 1.13041 1.45883 1.07946 1.07150 1.49088 1.19764 0.79697 0.90309 0.99098 1.21330 1.11303 1.33496 0.91721 0.91644 1.24951 0.95890 0.94733 0.98180 1.69927 1.18585 1.33064 1.31202 0.86299 0.78748 0.78133 0.83537 1.19501 1.20611 1.20526 1.22975 0.94548 0.82725 1.06140 1.20018 0.92090 0.96415 1.03072 1.69967 1.00025 1.30610 1.22682 0.92464 0.92120 0.92059 0.82134 0.93474 0.93261 0.92235 0.90696 0.90809 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.85 10.42 36.01 0.38 -0.47 15 2 C -0.03 -0.63 7.09 -82.85 -0.59 -1.22 15 3 C -0.05 -1.13 11.48 -16.56 -0.19 -1.32 15 4 N -0.42 -9.77 2.73 -115.19 -0.31 -10.09 15 5 C 0.23 5.74 5.64 -5.20 -0.03 5.71 15 6 C -0.54 -14.55 9.39 -34.44 -0.32 -14.88 15 7 H 0.07 1.82 7.81 -52.48 -0.41 1.41 15 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 9 N -0.89 -24.62 13.29 55.43 0.74 -23.89 15 10 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 15 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 14 C 0.20 4.40 7.90 -155.41 -1.23 3.17 15 15 C -0.06 -1.05 10.19 36.01 0.37 -0.68 15 16 N -0.51 -11.38 11.25 -7.07 -0.08 -11.46 15 17 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 18 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.16 2.99 8.06 -52.48 -0.42 2.56 15 21 H 0.05 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.05 1.25 7.20 -51.93 -0.37 0.87 15 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.07 1.33 8.14 -51.93 -0.42 0.90 15 25 H 0.07 1.33 7.16 -51.93 -0.37 0.95 15 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 LS Contribution 233.10 15.07 3.51 3.51 Total: -1.00 -29.59 233.10 -6.13 -35.72 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.25 Total: -1.46 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.71 Total: -8.01 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.34 Total: -45.44 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.59 -6.13 -35.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084403378.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.179 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds