Wall clock time and date at job start Mon Mar 30 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34663 * 125.98886 * 2 1 4 4 N 1.36880 * 106.81873 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.40231 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46956 * 265.00174 * 5 4 3 7 7 H 1.08006 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00041 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00394 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47041 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47241 * 119.99981 * 10 8 6 13 13 H 1.48501 * 109.47381 * 240.00192 * 10 8 6 14 14 C 1.35042 * 107.20395 * 359.97438 * 4 3 2 15 15 C 1.50704 * 125.65148 * 180.26280 * 14 4 3 16 16 N 1.30504 * 108.69855 * 359.97438 * 14 4 3 17 17 H 1.08998 * 109.46953 * 269.99942 * 1 2 3 18 18 H 1.09001 * 109.46856 * 29.99576 * 1 2 3 19 19 H 1.08992 * 109.46997 * 149.99873 * 1 2 3 20 20 H 1.08005 * 126.59404 * 0.02562 * 3 2 1 21 21 H 1.08999 * 109.46910 * 24.99813 * 5 4 3 22 22 H 1.08995 * 109.47420 * 144.99984 * 5 4 3 23 23 H 0.96999 * 120.00276 * 180.02562 * 9 8 6 24 24 H 1.08995 * 109.46986 * 269.72073 * 15 14 4 25 25 H 1.08998 * 109.47073 * 29.71696 * 15 14 4 26 26 H 1.09005 * 109.46869 * 149.72001 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 0.0006 5 6 4.7997 1.4684 0.0013 6 6 5.2847 1.6505 -1.4138 7 1 4.7469 1.1945 -2.2319 8 6 6.4150 2.3992 -1.6642 9 7 7.0703 2.9541 -0.6680 10 14 7.0167 2.6243 -3.4183 11 1 6.1107 1.9040 -4.3486 12 1 7.0253 4.0702 -3.7569 13 1 8.3919 2.0783 -3.5439 14 6 3.5450 -0.7095 0.0015 15 6 4.7387 -1.6294 0.0080 16 7 2.2952 -1.0852 0.0020 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5138 19 1 -0.3633 -0.8899 -0.5138 20 1 1.9751 2.1201 0.0004 21 1 4.5725 2.4420 0.4357 22 1 5.5750 0.9794 0.5911 23 1 7.8653 3.4812 -0.8442 24 1 5.0283 -1.8560 -1.0180 25 1 5.5688 -1.1438 0.5210 26 1 4.4822 -2.5537 0.5258 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084403378.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:48 Heat of formation + Delta-G solvation = 21.453516 kcal Electronic energy + Delta-G solvation = -10482.488091 eV Core-core repulsion = 8560.803655 eV Total energy + Delta-G solvation = -1921.684436 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.84338 -36.07312 -34.20040 -32.95077 -30.29087 -29.13225 -26.44838 -24.77710 -21.21021 -20.61429 -18.85824 -17.52851 -16.44166 -16.12146 -15.17344 -14.73645 -14.49951 -13.95294 -13.63881 -13.56942 -13.27766 -13.20267 -12.87290 -12.76577 -12.66302 -12.26994 -11.79768 -10.90646 -10.71625 -10.25777 -8.99176 -8.38613 -6.55298 1.29229 1.36024 1.39765 1.51219 2.19050 2.22644 2.38083 2.93742 3.65943 4.09906 4.31778 4.48863 4.64762 4.71404 4.72680 4.87524 4.95858 5.02909 5.14003 5.23245 5.50978 5.75060 5.78939 6.06364 6.36754 6.63535 7.17262 7.29676 8.69525 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.055998 B = 0.011457 C = 0.010900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.896314 B = 2443.396318 C = 2568.180262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.033 4.033 3 C -0.077 4.077 4 N -0.438 5.438 5 C 0.246 3.754 6 C -0.556 4.556 7 H 0.051 0.949 8 C 0.024 3.976 9 N -0.917 5.917 10 Si 0.971 3.029 11 H -0.273 1.273 12 H -0.273 1.273 13 H -0.270 1.270 14 C 0.182 3.818 15 C -0.055 4.055 16 N -0.529 5.529 17 H 0.075 0.925 18 H 0.082 0.918 19 H 0.066 0.934 20 H 0.179 0.821 21 H 0.033 0.967 22 H 0.040 0.960 23 H 0.274 0.726 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -3.218 0.217 6.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.163 4.163 3 C -0.211 4.211 4 N -0.117 5.117 5 C 0.126 3.874 6 C -0.594 4.594 7 H 0.069 0.931 8 C -0.177 4.177 9 N -0.555 5.555 10 Si 0.795 3.205 11 H -0.198 1.198 12 H -0.198 1.198 13 H -0.195 1.195 14 C -0.080 4.080 15 C -0.114 4.114 16 N -0.251 5.251 17 H 0.094 0.906 18 H 0.101 0.899 19 H 0.085 0.915 20 H 0.197 0.803 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.393 -3.805 0.280 6.606 hybrid contribution 0.844 1.296 -0.685 1.691 sum -4.549 -2.510 -0.405 5.211 Atomic orbital electron populations 1.19998 0.85292 1.03008 1.02694 1.21298 0.98022 0.88197 1.08773 1.22817 0.83426 1.01155 1.13750 1.45880 1.08020 1.07541 1.50286 1.19385 0.80292 0.89773 0.97974 1.21435 1.11802 1.34004 0.92140 0.93076 1.25730 0.95767 0.94112 1.02098 1.70003 1.19015 1.33377 1.33124 0.85303 0.78341 0.78276 0.78558 1.19760 1.19792 1.19482 1.23705 0.95718 0.82831 1.05786 1.20123 0.90819 0.96794 1.03618 1.70030 1.00290 1.31359 1.23381 0.90614 0.89902 0.91521 0.80340 0.94885 0.94237 0.91699 0.90345 0.91035 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.47 10.42 71.24 0.74 -0.73 15 2 C -0.03 -1.29 7.09 41.39 0.29 -1.00 15 3 C -0.08 -3.20 11.48 83.09 0.95 -2.24 15 4 N -0.44 -20.32 2.73 -518.35 -1.42 -21.73 15 5 C 0.25 12.44 5.64 85.63 0.48 12.93 15 6 C -0.56 -30.10 9.39 25.60 0.24 -29.86 15 7 H 0.05 2.87 7.81 -2.91 -0.02 2.84 15 8 C 0.02 1.29 5.46 84.65 0.46 1.75 15 9 N -0.92 -50.54 13.29 21.45 0.28 -50.26 15 10 Si 0.97 41.90 29.54 68.60 2.03 43.93 15 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 14 C 0.18 7.99 7.90 138.13 1.09 9.08 15 15 C -0.06 -1.98 10.19 71.24 0.73 -1.26 15 16 N -0.53 -23.01 11.25 -176.28 -1.98 -24.99 15 17 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 18 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 19 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.18 6.51 8.06 -2.91 -0.02 6.48 15 21 H 0.03 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.04 2.05 7.20 -2.39 -0.02 2.03 15 23 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 24 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.07 2.56 7.16 -2.39 -0.02 2.55 15 26 H 0.10 3.01 8.14 -2.38 -0.02 2.99 15 Total: -1.00 -61.45 233.10 5.06 -56.40 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.15 Total: 8.00 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.99 Total: -11.34 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -3.12 Total: -96.99 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -61.45 5.06 -56.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084403378.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.850 kcal (2) G-P(sol) polarization free energy of solvation -61.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds