Wall clock time and date at job start Mon Mar 30 2020 02:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47136 * 2 1 4 4 N 1.30322 * 125.97826 * 270.34667 * 3 2 1 5 5 N 1.39873 * 109.23459 * 180.11073 * 4 3 2 6 6 C 1.46497 * 125.67641 * 179.84699 * 5 4 3 7 7 C 1.34507 * 108.64813 * 359.57960 * 5 4 3 8 8 C 1.39280 * 107.18740 * 0.24576 * 7 5 4 9 9 C 1.41588 * 126.55922 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00525 * 186.90852 * 9 8 7 11 11 C 1.39698 * 119.99951 * 6.90083 * 9 8 7 12 12 N 1.31029 * 119.99822 * 10.70575 * 11 9 8 13 13 Si 1.86797 * 120.00080 * 190.70190 * 11 9 8 14 14 H 1.48504 * 109.47300 * 94.04353 * 13 11 9 15 15 H 1.48503 * 109.47304 * 214.04440 * 13 11 9 16 16 H 1.48504 * 109.47111 * 334.04472 * 13 11 9 17 17 H 1.09002 * 109.47372 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47621 * 300.00178 * 1 2 3 19 19 H 1.09006 * 109.47081 * 59.99914 * 1 2 3 20 20 H 1.08997 * 109.47621 * 239.99822 * 2 1 3 21 21 H 1.09001 * 109.47238 * 119.99363 * 2 1 3 22 22 H 1.09008 * 109.47079 * 269.69185 * 6 5 4 23 23 H 1.09004 * 109.47510 * 29.68996 * 6 5 4 24 24 H 1.08996 * 109.47286 * 149.69351 * 6 5 4 25 25 H 1.08000 * 126.40685 * 180.21793 * 7 5 4 26 26 H 0.96999 * 119.99650 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2815 2.1448 -1.0546 5 7 2.7327 3.4059 -0.6517 6 6 3.1183 4.5010 -1.5451 7 6 2.7479 3.4480 0.6927 8 6 2.3101 2.2067 1.1482 9 6 2.1686 1.8060 2.4988 10 1 1.9261 0.7805 2.7354 11 6 2.3427 2.7372 3.5256 12 7 2.4279 4.0141 3.2445 13 14 2.4540 2.1618 5.2993 14 1 3.8800 1.9826 5.6730 15 1 1.8329 3.1760 6.1886 16 1 1.7376 0.8693 5.4463 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8933 -0.5137 0.8900 22 1 4.1833 4.4309 -1.7671 23 1 2.5487 4.4316 -2.4719 24 1 2.9101 5.4552 -1.0612 25 1 3.0447 4.2871 1.3044 26 1 2.5485 4.6606 3.9574 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085017841.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:57 Heat of formation + Delta-G solvation = 56.702271 kcal Electronic energy + Delta-G solvation = -10611.371845 eV Core-core repulsion = 8691.215909 eV Total energy + Delta-G solvation = -1920.155936 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.23968 -33.73580 -33.09373 -30.52435 -28.53828 -26.20049 -24.20820 -22.20723 -19.65754 -17.96403 -16.70829 -15.26653 -14.23488 -14.12306 -13.52839 -13.24350 -12.63425 -12.15758 -11.86134 -11.44547 -11.26754 -11.14406 -10.90371 -10.69053 -10.31504 -10.16724 -9.60896 -9.15667 -8.74151 -7.64878 -6.99531 -6.35413 -3.88195 3.15305 3.25554 3.29474 3.50059 3.99437 4.25362 4.32215 5.58568 5.60880 5.91575 5.93377 5.94120 6.05776 6.26669 6.52567 6.55335 6.69663 6.98147 7.03686 7.41536 7.64389 7.87934 8.02499 8.50366 8.90694 9.17246 9.25747 9.51147 10.68425 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.037180 B = 0.016663 C = 0.012057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.904563 B = 1679.982362 C = 2321.837688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C 0.013 3.987 4 N -0.338 5.338 5 N -0.397 5.397 6 C 0.122 3.878 7 C -0.052 4.052 8 C -0.038 4.038 9 C -0.427 4.427 10 H 0.070 0.930 11 C 0.058 3.942 12 N -0.845 5.845 13 Si 0.908 3.092 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.268 1.268 17 H 0.045 0.955 18 H 0.060 0.940 19 H 0.046 0.954 20 H 0.054 0.946 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.182 0.818 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -1.192 -2.696 2.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.152 4.152 4 N -0.163 5.163 5 N -0.185 5.185 6 C -0.022 4.022 7 C -0.193 4.193 8 C -0.047 4.047 9 C -0.462 4.462 10 H 0.088 0.912 11 C -0.151 4.151 12 N -0.478 5.478 13 Si 0.735 3.265 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.192 1.192 17 H 0.064 0.936 18 H 0.079 0.921 19 H 0.065 0.935 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.199 0.801 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.166 -0.839 -3.866 3.960 hybrid contribution 0.151 0.067 1.782 1.790 sum -0.015 -0.772 -2.084 2.222 Atomic orbital electron populations 1.21660 0.95863 1.00075 1.02084 1.19577 0.94931 0.90591 1.01121 1.22205 1.04716 0.96448 0.91879 1.76273 1.23504 0.92003 1.24494 1.47559 1.55426 1.09981 1.05527 1.21335 0.99283 0.87714 0.93831 1.23535 1.11670 1.02843 0.81293 1.17950 1.02484 0.91391 0.92882 1.18716 1.42537 0.95885 0.89045 0.91230 1.25536 0.94663 0.94448 1.00411 1.69613 1.43228 1.01412 1.33551 0.86300 0.78633 0.78991 0.82603 1.20226 1.20950 1.19193 0.93577 0.92125 0.93457 0.92704 0.90951 0.93171 0.91457 0.91061 0.80110 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 37.16 0.37 -2.20 15 2 C -0.02 -0.47 6.31 -27.89 -0.18 -0.65 15 3 C 0.01 0.34 6.53 -81.84 -0.53 -0.19 15 4 N -0.34 -8.63 12.47 34.00 0.42 -8.20 15 5 N -0.40 -9.71 3.98 -67.19 -0.27 -9.98 15 6 C 0.12 2.19 11.44 59.85 0.68 2.88 15 7 C -0.05 -1.40 10.42 -15.99 -0.17 -1.56 15 8 C -0.04 -1.05 5.90 -106.83 -0.63 -1.68 15 9 C -0.43 -11.87 9.14 -37.76 -0.35 -12.21 15 10 H 0.07 1.85 7.34 -52.49 -0.39 1.47 15 11 C 0.06 1.55 5.45 -17.35 -0.09 1.45 15 12 N -0.85 -23.00 10.58 55.54 0.59 -22.42 15 13 Si 0.91 20.16 29.57 -169.99 -5.03 15.13 15 14 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 17 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 18 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 19 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.07 1.46 7.56 -51.93 -0.39 1.07 15 22 H 0.05 0.81 8.14 -51.92 -0.42 0.39 15 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.18 4.97 6.02 -52.49 -0.32 4.66 15 26 H 0.27 6.77 8.30 -40.82 -0.34 6.43 15 LS Contribution 229.22 15.07 3.45 3.45 Total: -1.00 -30.67 229.22 -4.91 -35.58 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.19 Total: 0.60 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.90 Total: -14.17 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.74 Total: -40.59 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.67 -4.91 -35.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085017841.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.285 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds