Wall clock time and date at job start Mon Mar 30 2020 02:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47136 * 2 1 4 4 N 1.30322 * 125.97826 * 270.34667 * 3 2 1 5 5 N 1.39873 * 109.23459 * 180.11073 * 4 3 2 6 6 C 1.46497 * 125.67641 * 179.84699 * 5 4 3 7 7 C 1.34507 * 108.64813 * 359.57960 * 5 4 3 8 8 C 1.39280 * 107.18740 * 0.24576 * 7 5 4 9 9 C 1.41588 * 126.55922 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00525 * 186.90852 * 9 8 7 11 11 C 1.39698 * 119.99951 * 6.90083 * 9 8 7 12 12 N 1.31029 * 119.99822 * 10.70575 * 11 9 8 13 13 Si 1.86797 * 120.00080 * 190.70190 * 11 9 8 14 14 H 1.48504 * 109.47300 * 94.04353 * 13 11 9 15 15 H 1.48503 * 109.47304 * 214.04440 * 13 11 9 16 16 H 1.48504 * 109.47111 * 334.04472 * 13 11 9 17 17 H 1.09002 * 109.47372 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47621 * 300.00178 * 1 2 3 19 19 H 1.09006 * 109.47081 * 59.99914 * 1 2 3 20 20 H 1.08997 * 109.47621 * 239.99822 * 2 1 3 21 21 H 1.09001 * 109.47238 * 119.99363 * 2 1 3 22 22 H 1.09008 * 109.47079 * 269.69185 * 6 5 4 23 23 H 1.09004 * 109.47510 * 29.68996 * 6 5 4 24 24 H 1.08996 * 109.47286 * 149.69351 * 6 5 4 25 25 H 1.08000 * 126.40685 * 180.21793 * 7 5 4 26 26 H 0.96999 * 119.99650 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2815 2.1448 -1.0546 5 7 2.7327 3.4059 -0.6517 6 6 3.1183 4.5010 -1.5451 7 6 2.7479 3.4480 0.6927 8 6 2.3101 2.2067 1.1482 9 6 2.1686 1.8060 2.4988 10 1 1.9261 0.7805 2.7354 11 6 2.3427 2.7372 3.5256 12 7 2.4279 4.0141 3.2445 13 14 2.4540 2.1618 5.2993 14 1 3.8800 1.9826 5.6730 15 1 1.8329 3.1760 6.1886 16 1 1.7376 0.8693 5.4463 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8933 -0.5137 0.8900 22 1 4.1833 4.4309 -1.7671 23 1 2.5487 4.4316 -2.4719 24 1 2.9101 5.4552 -1.0612 25 1 3.0447 4.2871 1.3044 26 1 2.5485 4.6606 3.9574 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085017841.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:57 Heat of formation + Delta-G solvation = 37.513747 kcal Electronic energy + Delta-G solvation = -10612.203921 eV Core-core repulsion = 8691.215909 eV Total energy + Delta-G solvation = -1920.988012 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.16488 -35.56931 -34.96686 -32.17347 -30.55478 -27.98761 -26.06241 -23.86529 -21.64162 -19.83943 -18.69982 -17.19510 -16.04798 -15.85107 -15.20959 -14.85016 -14.40956 -13.82094 -13.50177 -13.29307 -13.06847 -12.89871 -12.55471 -12.36460 -12.06830 -11.79504 -11.56463 -11.12134 -10.70665 -9.54170 -9.03247 -8.34717 -5.95226 1.38896 1.45666 1.55866 1.58051 2.24442 2.34180 2.41397 3.55600 4.05879 4.32886 4.40904 4.54401 4.68176 4.68785 4.87015 4.96650 5.09681 5.17552 5.39475 5.50070 5.69611 5.86840 6.07576 6.51899 6.94076 7.15236 7.20654 7.52594 8.70091 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.037180 B = 0.016663 C = 0.012057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.904563 B = 1679.982362 C = 2321.837688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.024 4.024 3 C 0.001 3.999 4 N -0.346 5.346 5 N -0.401 5.401 6 C 0.111 3.889 7 C -0.068 4.068 8 C -0.076 4.076 9 C -0.457 4.457 10 H 0.071 0.929 11 C 0.013 3.987 12 N -0.871 5.871 13 Si 0.981 3.019 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.261 1.261 17 H 0.084 0.916 18 H 0.038 0.962 19 H 0.043 0.957 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.173 0.827 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -1.794 -2.550 3.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.165 4.165 4 N -0.171 5.171 5 N -0.189 5.189 6 C -0.030 4.030 7 C -0.211 4.211 8 C -0.085 4.085 9 C -0.492 4.492 10 H 0.089 0.911 11 C -0.193 4.193 12 N -0.504 5.504 13 Si 0.804 3.196 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.184 1.184 17 H 0.103 0.897 18 H 0.057 0.943 19 H 0.062 0.938 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.190 0.810 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.270 -1.425 -3.756 4.027 hybrid contribution 0.204 0.317 1.650 1.693 sum -0.066 -1.108 -2.106 2.381 Atomic orbital electron populations 1.21582 0.94131 1.02236 1.00798 1.19732 0.96370 0.88144 1.02085 1.22838 1.04399 0.98269 0.90964 1.76199 1.23591 0.92625 1.24720 1.47983 1.54707 1.10759 1.05444 1.21746 1.00863 0.86635 0.93781 1.23459 1.12293 1.02601 0.82701 1.18431 1.03560 0.92531 0.94012 1.18984 1.44022 0.96362 0.89810 0.91095 1.26417 0.93795 0.94416 1.04702 1.69694 1.43268 1.02380 1.35079 0.85184 0.78734 0.78734 0.76916 1.19686 1.20227 1.18449 0.89670 0.94260 0.93805 0.90773 0.90819 0.91099 0.89528 0.89342 0.81025 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.89 71.98 0.71 -3.87 15 2 C -0.02 -0.97 6.31 29.85 0.19 -0.78 15 3 C 0.00 0.06 6.53 43.69 0.29 0.35 15 4 N -0.35 -17.49 12.47 -46.35 -0.58 -18.07 15 5 N -0.40 -19.44 3.98 -366.48 -1.46 -20.90 15 6 C 0.11 3.82 11.44 127.77 1.46 5.28 15 7 C -0.07 -3.72 10.42 84.53 0.88 -2.84 15 8 C -0.08 -4.30 5.90 -21.30 -0.13 -4.42 15 9 C -0.46 -25.70 9.14 23.45 0.21 -25.49 15 10 H 0.07 3.81 7.34 -2.91 -0.02 3.79 15 11 C 0.01 0.68 5.45 85.17 0.46 1.14 15 12 N -0.87 -47.80 10.58 21.79 0.23 -47.57 15 13 Si 0.98 41.11 29.57 68.60 2.03 43.14 15 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 15 H -0.28 -11.21 7.11 99.48 0.71 -10.50 15 16 H -0.26 -10.52 7.11 99.48 0.71 -9.82 15 17 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 18 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 19 H 0.04 1.56 8.14 -2.38 -0.02 1.54 15 20 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 21 H 0.07 2.92 7.56 -2.39 -0.02 2.90 15 22 H 0.07 2.15 8.14 -2.38 -0.02 2.13 15 23 H 0.09 2.63 8.14 -2.39 -0.02 2.61 15 24 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.17 9.66 6.02 -2.91 -0.02 9.64 15 26 H 0.27 13.85 8.30 -92.71 -0.77 13.08 15 Total: -1.00 -65.32 229.22 5.46 -59.86 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.16 Total: 14.17 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 4.08 Total: -30.64 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.81 Total: -86.53 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -65.32 5.46 -59.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085017841.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.374 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds