Wall clock time and date at job start Mon Mar 30 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46702 * 2 1 4 4 N 1.39876 * 125.67820 * 270.00363 * 3 2 1 5 5 C 1.30328 * 109.23034 * 180.02562 * 4 3 2 6 6 C 1.41877 * 108.04677 * 0.02562 * 5 4 3 7 7 C 1.41592 * 126.55847 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00476 * 180.02562 * 7 6 5 9 9 C 1.39695 * 119.99869 * 0.02873 * 7 6 5 10 10 N 1.31027 * 120.00135 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00281 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47227 * 89.99533 * 11 9 7 13 13 H 1.48503 * 109.47073 * 209.99683 * 11 9 7 14 14 H 1.48498 * 109.46647 * 329.99650 * 11 9 7 15 15 C 1.34503 * 125.67284 * 90.00553 * 3 2 1 16 16 C 1.50699 * 126.40753 * 0.26381 * 15 3 2 17 17 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.46812 * 299.98973 * 1 2 3 19 19 H 1.08991 * 109.47607 * 59.99780 * 1 2 3 20 20 H 1.08999 * 109.46812 * 240.01027 * 2 1 3 21 21 H 1.08991 * 109.47607 * 120.00219 * 2 1 3 22 22 H 1.07994 * 125.97052 * 180.02562 * 5 4 3 23 23 H 0.96997 * 120.00725 * 180.02562 * 10 9 7 24 24 H 1.09005 * 109.46966 * 269.70905 * 16 15 3 25 25 H 1.08994 * 109.47252 * 29.71028 * 16 15 3 26 26 H 1.08997 * 109.47349 * 149.70870 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1505 -1.1362 5 6 2.7072 3.3288 -0.7672 6 6 2.7214 3.3657 0.6510 7 6 3.1094 4.4593 1.4623 8 1 3.0794 4.3710 2.5383 9 6 3.5311 5.6527 0.8710 10 7 3.5679 5.7598 -0.4343 11 14 4.0437 7.0954 1.9413 12 1 5.4993 7.0102 2.2228 13 1 3.7502 8.3667 1.2322 14 1 3.2891 7.0559 3.2197 15 6 2.2798 2.1208 1.0926 16 6 2.1306 1.6817 2.5265 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5138 -0.8899 20 1 1.8933 -0.5137 -0.8901 21 1 1.8934 -0.5138 0.8899 22 1 2.9921 4.1358 -1.4259 23 1 3.8610 6.5882 -0.8450 24 1 1.1261 1.9194 2.8767 25 1 2.2948 0.6064 2.5962 26 1 2.8631 2.2017 3.1438 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085112428.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:24 Heat of formation + Delta-G solvation = 38.386319 kcal Electronic energy + Delta-G solvation = -10620.838242 eV Core-core repulsion = 8699.888067 eV Total energy + Delta-G solvation = -1920.950175 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.20248 -35.78993 -34.44789 -32.60477 -30.21691 -28.30441 -25.99968 -24.11573 -21.51954 -19.99005 -18.68412 -16.68089 -16.56006 -15.65311 -15.37452 -14.73836 -14.08806 -13.81117 -13.65757 -13.18447 -12.96954 -12.79573 -12.71106 -12.36221 -12.29277 -12.00144 -11.69432 -11.10891 -10.75315 -9.52669 -9.04621 -8.31606 -5.95032 1.29975 1.45563 1.57861 1.60041 2.28049 2.36425 2.42799 3.58092 3.95373 4.27221 4.37562 4.47914 4.63341 4.70736 4.82121 4.95071 5.07880 5.17819 5.30308 5.35233 5.75738 5.76610 6.15873 6.62657 6.82311 7.16779 7.21067 7.58474 8.69636 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.072003 B = 0.012414 C = 0.011016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.779975 B = 2255.044527 C = 2541.210599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 N -0.381 5.381 4 N -0.361 5.361 5 C -0.004 4.004 6 C -0.070 4.070 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.015 3.985 10 N -0.875 5.875 11 Si 0.988 3.012 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.261 1.261 15 C -0.083 4.083 16 C -0.045 4.045 17 H 0.104 0.896 18 H 0.051 0.949 19 H 0.037 0.963 20 H 0.085 0.915 21 H 0.105 0.895 22 H 0.185 0.815 23 H 0.276 0.724 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -6.631 4.623 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 N -0.170 5.170 4 N -0.186 5.186 5 C -0.189 4.189 6 C -0.080 4.080 7 C -0.500 4.500 8 H 0.090 0.910 9 C -0.191 4.191 10 N -0.508 5.508 11 Si 0.811 3.189 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.185 1.185 15 C -0.207 4.207 16 C -0.103 4.103 17 H 0.123 0.877 18 H 0.070 0.930 19 H 0.057 0.943 20 H 0.103 0.897 21 H 0.123 0.877 22 H 0.201 0.799 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.174 -7.341 3.496 8.728 hybrid contribution 0.473 1.399 0.620 1.602 sum -2.701 -5.941 4.116 7.716 Atomic orbital electron populations 1.22105 0.94192 1.03682 1.01465 1.21676 0.95540 0.78038 1.04142 1.47980 1.54243 1.12023 1.02713 1.76453 1.25405 1.06280 1.10422 1.24841 1.02252 0.94502 0.97257 1.18444 1.03221 0.93841 0.92462 1.19014 1.40862 0.96496 0.93676 0.91013 1.26547 0.94068 1.02112 0.96374 1.69583 1.41831 1.27753 1.11621 0.85101 0.78831 0.76484 0.78512 1.19406 1.20083 1.18451 1.21572 1.14408 0.93742 0.91003 1.19930 1.01674 1.00667 0.88070 0.87701 0.92976 0.94328 0.89690 0.87724 0.79907 0.91320 0.91908 0.90657 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.56 15 2 C 0.13 4.08 6.93 86.38 0.60 4.68 15 3 N -0.38 -17.55 3.58 -331.78 -1.19 -18.74 15 4 N -0.36 -19.46 12.47 -55.94 -0.70 -20.16 15 5 C 0.00 -0.26 10.91 85.82 0.94 0.68 15 6 C -0.07 -4.00 5.93 -21.30 -0.13 -4.13 15 7 C -0.47 -26.41 9.13 23.45 0.21 -26.20 15 8 H 0.07 3.84 7.34 -2.91 -0.02 3.82 15 9 C 0.02 0.82 5.49 85.17 0.47 1.29 15 10 N -0.87 -49.17 10.32 21.79 0.22 -48.95 15 11 Si 0.99 41.32 29.56 68.60 2.03 43.35 15 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 13 H -0.28 -11.14 7.11 99.48 0.71 -10.44 15 14 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 15 C -0.08 -4.01 7.06 42.40 0.30 -3.71 15 16 C -0.04 -1.65 9.91 71.24 0.71 -0.95 15 17 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 18 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 19 H 0.04 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.10 2.73 7.02 -2.39 -0.02 2.71 15 22 H 0.18 11.12 5.77 -2.91 -0.02 11.11 15 23 H 0.28 14.26 8.30 -92.71 -0.77 13.49 15 24 H 0.06 2.13 8.14 -2.38 -0.02 2.11 15 25 H 0.07 2.21 7.06 -2.39 -0.02 2.20 15 26 H 0.06 2.41 7.59 -2.39 -0.02 2.39 15 Total: -1.00 -67.12 226.64 5.36 -61.75 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.16 Total: 14.63 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 3.83 Total: -31.89 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -1.66 Total: -87.85 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -67.12 5.36 -61.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085112428.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.140 kcal (2) G-P(sol) polarization free energy of solvation -67.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds