Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48505 * 109.46925 * 270.00099 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00164 * 3 2 1 6 6 H 1.48493 * 109.46929 * 150.00100 * 3 2 1 7 7 C 1.38926 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99831 * 169.58578 * 7 2 1 9 9 N 1.37492 * 119.99819 * 349.31606 * 7 2 1 10 10 C 1.36850 * 125.68758 * 161.00757 * 9 7 2 11 11 C 1.34811 * 108.18018 * 180.02562 * 10 9 7 12 12 C 1.41168 * 107.51101 * 359.97438 * 11 10 9 13 13 C 1.50692 * 126.24906 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47122 * 90.02457 * 13 12 11 15 15 N 1.46901 * 109.47112 * 180.02562 * 14 13 12 16 16 C 1.34813 * 107.50667 * 359.73963 * 12 11 10 17 17 H 0.97001 * 119.99959 * 359.97438 * 1 2 3 18 18 H 1.07999 * 125.91215 * 359.97300 * 10 9 7 19 19 H 1.08004 * 126.24304 * 179.97438 * 11 10 9 20 20 H 1.08997 * 109.47587 * 210.02886 * 13 12 11 21 21 H 1.09002 * 109.47419 * 330.02814 * 13 12 11 22 22 H 1.09003 * 109.47139 * 300.00212 * 14 13 12 23 23 H 1.09001 * 109.46864 * 60.00429 * 14 13 12 24 24 H 1.00895 * 111.00428 * 56.04731 * 15 14 13 25 25 H 1.00906 * 110.99832 * 180.02562 * 15 14 13 26 26 H 1.07994 * 125.90918 * 180.29712 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5451 1.4400 0.7000 7 6 2.0081 -1.2032 0.0005 8 1 3.0748 -1.2110 -0.1685 9 7 1.3384 -2.3834 0.2218 10 6 1.7937 -3.6326 -0.1023 11 6 0.8593 -4.5304 0.2692 12 6 -0.2128 -3.8144 0.8443 13 6 -1.4814 -4.4056 1.4028 14 6 -1.2888 -4.7151 2.8888 15 7 -2.5253 -5.2921 3.4330 16 6 0.1081 -2.5055 0.8085 17 1 -0.4850 0.8401 0.0004 18 1 2.7379 -3.8598 -0.5749 19 1 0.9198 -5.6020 0.1489 20 1 -2.2978 -3.6935 1.2828 21 1 -1.7199 -5.3251 0.8682 22 1 -0.4724 -5.4274 3.0087 23 1 -1.0504 -3.7957 3.4234 24 1 -2.8025 -6.1104 2.9120 25 1 -2.4236 -5.5050 4.4141 26 1 -0.5013 -1.6936 1.1767 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085586283.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = 33.718928 kcal Electronic energy + Delta-G solvation = -10400.852641 eV Core-core repulsion = 8479.700073 eV Total energy + Delta-G solvation = -1921.152568 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.51005 -35.04924 -33.32467 -30.75395 -28.32621 -26.29085 -24.32607 -21.56275 -19.25107 -18.16872 -17.56533 -15.56040 -15.00457 -14.52882 -14.05141 -13.37133 -12.75734 -12.33637 -12.22102 -11.62786 -11.31762 -11.13513 -10.93333 -10.81077 -10.47723 -10.27528 -9.85852 -9.15743 -8.34624 -7.42736 -6.69813 -6.38988 -4.27914 2.98978 3.07683 3.12340 3.86982 3.98024 4.33326 5.00116 5.08412 5.37560 5.78886 6.01735 6.29255 6.53666 6.58049 6.83689 6.86310 7.05878 7.15560 7.29740 7.49182 7.69888 7.74219 7.80835 8.08635 8.62994 8.69440 9.28350 9.72249 10.39937 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.062076 B = 0.010974 C = 0.009823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.950566 B = 2550.758091 C = 2849.686053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.044 3.956 3 Si 0.936 3.064 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.350 4.350 8 H 0.103 0.897 9 N -0.258 5.258 10 C -0.085 4.085 11 C -0.228 4.228 12 C -0.237 4.237 13 C -0.022 4.022 14 C 0.067 3.933 15 N -0.856 5.856 16 C 0.011 3.989 17 H 0.277 0.723 18 H 0.131 0.869 19 H 0.104 0.896 20 H 0.059 0.941 21 H 0.046 0.954 22 H 0.022 0.978 23 H 0.068 0.932 24 H 0.334 0.666 25 H 0.332 0.668 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -3.606 3.237 4.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.165 4.165 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.121 0.879 9 N 0.085 4.915 10 C -0.220 4.220 11 C -0.254 4.254 12 C -0.243 4.243 13 C -0.060 4.060 14 C -0.063 4.063 15 N -0.384 5.384 16 C -0.128 4.128 17 H 0.088 0.912 18 H 0.149 0.851 19 H 0.122 0.878 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.040 0.960 23 H 0.087 0.913 24 H 0.146 0.854 25 H 0.144 0.856 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.772 -2.398 2.956 3.884 hybrid contribution 1.042 -0.101 0.052 1.048 sum 0.270 -2.498 3.008 3.919 Atomic orbital electron populations 1.69936 1.06308 1.28516 1.42831 1.25500 0.95629 1.00463 0.94862 0.85794 0.79393 0.79908 0.78827 1.19792 1.20147 1.18974 1.19895 0.93745 0.82630 1.51515 0.87929 1.40252 1.12852 1.04197 1.34234 1.21366 1.01705 0.84966 1.13949 1.20169 0.96564 0.96461 1.12168 1.18937 0.97884 0.93423 1.14060 1.19556 0.95278 0.98944 0.92255 1.21901 0.88812 0.98627 0.96995 1.58813 1.36312 1.36462 1.06837 1.21760 0.90102 0.96103 1.04821 0.91239 0.85084 0.87806 0.92231 0.93557 0.95993 0.91316 0.85439 0.85645 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.02 10.84 55.49 0.60 -22.42 15 2 C 0.04 1.16 5.37 -17.50 -0.09 1.07 15 3 Si 0.94 19.62 29.56 -169.99 -5.03 14.59 15 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 7 C -0.35 -9.58 10.08 -14.76 -0.15 -9.73 15 8 H 0.10 2.64 7.85 -52.49 -0.41 2.22 15 9 N -0.26 -7.15 2.90 -62.00 -0.18 -7.33 15 10 C -0.09 -2.16 11.37 -16.53 -0.19 -2.35 15 11 C -0.23 -5.50 10.81 -39.69 -0.43 -5.93 15 12 C -0.24 -5.77 5.39 -104.73 -0.56 -6.34 15 13 C -0.02 -0.44 5.97 -27.89 -0.17 -0.61 15 14 C 0.07 1.18 6.77 -3.82 -0.03 1.16 15 15 N -0.86 -12.45 9.62 -10.37 -0.10 -12.55 15 16 C 0.01 0.30 9.97 -16.53 -0.16 0.13 15 17 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 18 H 0.13 2.97 8.06 -52.49 -0.42 2.54 15 19 H 0.10 2.22 8.06 -52.48 -0.42 1.80 15 20 H 0.06 1.24 8.14 -51.93 -0.42 0.81 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.33 4.29 8.99 -39.29 -0.35 3.94 15 25 H 0.33 4.05 9.08 -39.29 -0.36 3.69 15 26 H 0.16 4.47 6.35 -52.49 -0.33 4.13 15 LS Contribution 229.24 15.07 3.45 3.45 Total: -1.00 -29.19 229.24 -6.16 -35.35 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -3.13 Total: 11.50 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.78 Total: -22.60 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.32 Total: -42.30 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.19 -6.16 -35.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586283.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.070 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds