Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48505 * 109.46925 * 270.00099 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00164 * 3 2 1 6 6 H 1.48493 * 109.46929 * 150.00100 * 3 2 1 7 7 C 1.38926 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99831 * 169.58578 * 7 2 1 9 9 N 1.37492 * 119.99819 * 349.31606 * 7 2 1 10 10 C 1.36850 * 125.68758 * 161.00757 * 9 7 2 11 11 C 1.34811 * 108.18018 * 180.02562 * 10 9 7 12 12 C 1.41168 * 107.51101 * 359.97438 * 11 10 9 13 13 C 1.50692 * 126.24906 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47122 * 90.02457 * 13 12 11 15 15 N 1.46901 * 109.47112 * 180.02562 * 14 13 12 16 16 C 1.34813 * 107.50667 * 359.73963 * 12 11 10 17 17 H 0.97001 * 119.99959 * 359.97438 * 1 2 3 18 18 H 1.07999 * 125.91215 * 359.97300 * 10 9 7 19 19 H 1.08004 * 126.24304 * 179.97438 * 11 10 9 20 20 H 1.08997 * 109.47587 * 210.02886 * 13 12 11 21 21 H 1.09002 * 109.47419 * 330.02814 * 13 12 11 22 22 H 1.09003 * 109.47139 * 300.00212 * 14 13 12 23 23 H 1.09001 * 109.46864 * 60.00429 * 14 13 12 24 24 H 1.00895 * 111.00428 * 56.04731 * 15 14 13 25 25 H 1.00906 * 110.99832 * 180.02562 * 15 14 13 26 26 H 1.07994 * 125.90918 * 180.29712 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5451 1.4400 0.7000 7 6 2.0081 -1.2032 0.0005 8 1 3.0748 -1.2110 -0.1685 9 7 1.3384 -2.3834 0.2218 10 6 1.7937 -3.6326 -0.1023 11 6 0.8593 -4.5304 0.2692 12 6 -0.2128 -3.8144 0.8443 13 6 -1.4814 -4.4056 1.4028 14 6 -1.2888 -4.7151 2.8888 15 7 -2.5253 -5.2921 3.4330 16 6 0.1081 -2.5055 0.8085 17 1 -0.4850 0.8401 0.0004 18 1 2.7379 -3.8598 -0.5749 19 1 0.9198 -5.6020 0.1489 20 1 -2.2978 -3.6935 1.2828 21 1 -1.7199 -5.3251 0.8682 22 1 -0.4724 -5.4274 3.0087 23 1 -1.0504 -3.7957 3.4234 24 1 -2.8025 -6.1104 2.9120 25 1 -2.4236 -5.5050 4.4141 26 1 -0.5013 -1.6936 1.1767 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085586283.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = 14.652655 kcal Electronic energy + Delta-G solvation = -10401.679416 eV Core-core repulsion = 8479.700073 eV Total energy + Delta-G solvation = -1921.979344 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.47284 -36.56008 -35.21373 -32.54697 -30.13272 -28.17149 -26.23088 -23.12196 -21.19614 -20.06005 -19.57655 -17.30198 -16.53617 -16.19194 -15.59767 -15.02158 -14.53112 -14.25523 -14.07902 -13.43544 -13.09034 -12.84827 -12.72337 -12.47469 -12.14730 -12.10484 -11.59741 -11.07766 -9.57065 -9.39385 -8.67544 -8.37686 -6.34543 1.31301 1.36648 1.52127 1.98142 2.16409 2.43632 3.04601 3.38124 3.84032 4.26613 4.52366 4.67419 4.76897 4.83875 5.01202 5.12453 5.25310 5.33503 5.39405 5.71619 5.83894 6.12120 6.28366 6.61146 6.69632 6.79415 7.28837 7.70655 8.44508 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.062076 B = 0.010974 C = 0.009823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.950566 B = 2550.758091 C = 2849.686053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C -0.001 4.001 3 Si 1.015 2.985 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.388 4.388 8 H 0.111 0.889 9 N -0.278 5.278 10 C -0.103 4.103 11 C -0.229 4.229 12 C -0.231 4.231 13 C -0.019 4.019 14 C 0.080 3.920 15 N -0.855 5.855 16 C -0.027 4.027 17 H 0.282 0.718 18 H 0.152 0.848 19 H 0.135 0.865 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.026 0.974 23 H 0.050 0.950 24 H 0.348 0.652 25 H 0.349 0.651 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -4.023 3.462 5.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.206 4.206 3 Si 0.834 3.166 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.515 4.515 8 H 0.128 0.872 9 N 0.063 4.937 10 C -0.237 4.237 11 C -0.255 4.255 12 C -0.238 4.238 13 C -0.057 4.057 14 C -0.051 4.051 15 N -0.386 5.386 16 C -0.165 4.165 17 H 0.092 0.908 18 H 0.170 0.830 19 H 0.153 0.847 20 H 0.066 0.934 21 H 0.084 0.916 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.161 0.839 25 H 0.162 0.838 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.474 -2.847 3.191 4.303 hybrid contribution 0.897 -0.052 -0.024 0.898 sum 0.423 -2.899 3.167 4.314 Atomic orbital electron populations 1.70057 1.08047 1.29791 1.43183 1.26619 0.96480 1.04013 0.93510 0.84647 0.78105 0.74587 0.79231 1.18830 1.19508 1.17984 1.20391 0.94522 0.83500 1.53052 0.87153 1.40541 1.13205 1.05041 1.34892 1.21941 1.02987 0.84674 1.14131 1.20550 0.95833 0.97860 1.11222 1.19418 0.99219 0.92508 1.12613 1.19574 0.92845 0.99163 0.94139 1.21584 0.90299 0.98231 0.95020 1.58674 1.34439 1.37374 1.08115 1.21770 0.90772 0.96899 1.07041 0.90772 0.83002 0.84729 0.93370 0.91550 0.95527 0.93170 0.83940 0.83779 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.95 10.84 21.65 0.23 -48.71 15 2 C 0.00 -0.04 5.37 84.93 0.46 0.41 15 3 Si 1.01 39.99 29.56 68.60 2.03 42.02 15 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 5 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 7 C -0.39 -21.51 10.08 83.97 0.85 -20.66 15 8 H 0.11 5.71 7.85 -2.91 -0.02 5.68 15 9 N -0.28 -15.69 2.90 -350.07 -1.02 -16.71 15 10 C -0.10 -5.18 11.37 83.12 0.94 -4.24 15 11 C -0.23 -10.75 10.81 22.20 0.24 -10.51 15 12 C -0.23 -11.20 5.39 -19.93 -0.11 -11.31 15 13 C -0.02 -0.73 5.97 29.85 0.18 -0.55 15 14 C 0.08 2.70 6.77 86.30 0.58 3.28 15 15 N -0.85 -22.87 9.62 -186.71 -1.80 -24.67 15 16 C -0.03 -1.51 9.97 83.12 0.83 -0.68 15 17 H 0.28 14.41 8.31 -92.71 -0.77 13.64 15 18 H 0.15 6.74 8.06 -2.91 -0.02 6.72 15 19 H 0.13 5.37 8.06 -2.91 -0.02 5.34 15 20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 22 H 0.03 0.88 8.14 -2.39 -0.02 0.86 15 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.35 7.91 8.99 -89.70 -0.81 7.10 15 25 H 0.35 7.61 9.08 -89.69 -0.81 6.80 15 26 H 0.14 8.15 6.35 -2.91 -0.02 8.13 15 Total: -1.00 -62.66 229.24 2.98 -59.68 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.44 Total: 32.66 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.97 Total: -44.26 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.58 Total: -90.09 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -62.66 2.98 -59.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586283.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.332 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds