Wall clock time and date at job start Mon Mar 30 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 C 1.50697 * 109.47289 * 120.00249 * 2 1 3 5 5 H 1.08003 * 120.00211 * 120.00327 * 4 2 1 6 6 C 1.37873 * 119.99865 * 300.00299 * 4 2 1 7 7 N 1.31513 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00039 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47058 * 89.99738 * 8 6 4 10 10 H 1.48500 * 109.47190 * 210.00180 * 8 6 4 11 11 H 1.48502 * 109.46688 * 329.99659 * 8 6 4 12 12 N 1.46906 * 109.47531 * 240.00395 * 2 1 3 13 13 N 1.36599 * 111.00065 * 84.99510 * 12 2 1 14 14 C 1.36345 * 125.63513 * 359.97438 * 13 12 2 15 15 C 1.34848 * 108.21855 * 180.02562 * 14 13 12 16 16 C 1.40895 * 107.41714 * 359.97438 * 15 14 13 17 17 C 1.34844 * 107.41841 * 0.02562 * 16 15 14 18 18 H 1.09003 * 109.47379 * 59.99994 * 1 2 3 19 19 H 1.08995 * 109.47135 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47270 * 299.99995 * 1 2 3 21 21 H 0.97005 * 120.00379 * 179.97438 * 7 6 4 22 22 H 1.00900 * 111.00091 * 208.95650 * 12 2 1 23 23 H 1.08001 * 125.88997 * 0.02562 * 14 13 12 24 24 H 1.07999 * 126.29387 * 180.26704 * 15 14 13 25 25 H 1.07997 * 126.29120 * 180.02562 * 16 15 14 26 26 H 1.07994 * 125.89561 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4826 7 7 0.9434 0.8300 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.6296 -0.5461 4.4123 10 1 1.3430 -0.9496 5.1120 11 1 2.4857 -2.5664 3.7118 12 7 2.0197 -0.6924 -1.1995 13 7 2.0780 0.1585 -2.2665 14 6 1.7339 1.4777 -2.2501 15 6 1.9260 1.9789 -3.4872 16 6 2.4069 0.9308 -4.2968 17 6 2.4898 -0.1709 -3.5238 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 0.7088 1.1612 3.4845 22 1 2.9173 -1.1204 -1.0288 23 1 1.3702 2.0266 -1.3941 24 1 1.7488 2.9976 -3.7989 25 1 2.6622 0.9976 -5.3441 26 1 2.8244 -1.1461 -3.8451 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085830863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:32 Heat of formation + Delta-G solvation = 60.024354 kcal Electronic energy + Delta-G solvation = -10621.326308 eV Core-core repulsion = 8701.314429 eV Total energy + Delta-G solvation = -1920.011879 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.18126 -37.53530 -34.79223 -31.85912 -29.61171 -28.38195 -27.25084 -23.08438 -21.45452 -20.49891 -19.29691 -18.13523 -17.17661 -16.36296 -15.23472 -14.91824 -14.70156 -14.25730 -13.61691 -13.12543 -13.04243 -12.89031 -12.81423 -12.57685 -12.36673 -12.17684 -11.17350 -11.02123 -10.52480 -9.04038 -8.84608 -8.27729 -6.45149 1.40264 1.41592 1.48153 1.52520 1.90099 2.19137 2.37062 3.03158 3.60600 4.38921 4.47672 4.59288 4.63635 4.87596 4.90477 5.00787 5.32011 5.37564 5.44540 5.54275 5.71130 5.83440 6.02895 6.20867 6.46917 6.68583 7.25405 7.27130 8.78635 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.084692 B = 0.010759 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.531017 B = 2601.767156 C = 2738.231265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.200 3.800 3 H 0.002 0.998 4 C -0.552 4.552 5 H 0.068 0.932 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.973 3.027 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.265 1.265 12 N -0.455 5.455 13 N -0.291 5.291 14 C -0.061 4.061 15 C -0.208 4.208 16 C -0.210 4.210 17 C -0.025 4.025 18 H 0.020 0.980 19 H 0.032 0.968 20 H 0.069 0.931 21 H 0.268 0.732 22 H 0.349 0.651 23 H 0.143 0.857 24 H 0.153 0.847 25 H 0.165 0.835 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -0.901 -6.889 7.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.020 0.980 4 C -0.591 4.591 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.797 3.203 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.178 5.178 13 N -0.050 5.050 14 C -0.194 4.194 15 C -0.234 4.234 16 C -0.235 4.235 17 C -0.157 4.157 18 H 0.039 0.961 19 H 0.051 0.949 20 H 0.088 0.912 21 H 0.077 0.923 22 H 0.170 0.830 23 H 0.161 0.839 24 H 0.171 0.829 25 H 0.183 0.817 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.996 -1.293 -6.609 7.023 hybrid contribution 0.777 0.218 1.376 1.595 sum 2.773 -1.074 -5.233 6.018 Atomic orbital electron populations 1.21566 0.96513 0.99505 0.99694 1.19505 0.93755 0.92714 0.84755 0.98039 1.21379 1.33270 1.13656 0.90785 0.91369 1.25734 0.94627 0.95507 1.02136 1.69994 1.36454 1.23638 1.24909 0.85326 0.78020 0.78993 0.77938 1.19947 1.20594 1.18963 1.62555 1.31308 1.22514 1.01383 1.43745 1.48280 1.06469 1.06542 1.22006 1.12031 0.84391 1.00945 1.21034 1.09122 1.00585 0.92678 1.21093 1.09658 0.92165 1.00591 1.22186 1.09121 1.01974 0.82411 0.96098 0.94879 0.91197 0.92253 0.82984 0.83936 0.82917 0.81723 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 9.10 71.98 0.65 -5.07 15 2 C 0.20 10.09 2.18 44.16 0.10 10.19 15 3 H 0.00 0.12 6.02 -2.39 -0.01 0.10 15 4 C -0.55 -29.31 8.59 25.60 0.22 -29.09 15 5 H 0.07 3.48 7.62 -2.91 -0.02 3.46 15 6 C 0.02 1.11 5.30 84.65 0.45 1.56 15 7 N -0.91 -50.65 11.32 21.45 0.24 -50.41 15 8 Si 0.97 41.67 29.54 68.60 2.03 43.70 15 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 11 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 12 N -0.45 -19.99 7.03 -171.80 -1.21 -21.20 15 13 N -0.29 -11.84 3.67 -194.57 -0.71 -12.55 15 14 C -0.06 -2.49 9.30 83.21 0.77 -1.71 15 15 C -0.21 -7.16 10.86 22.14 0.24 -6.92 15 16 C -0.21 -6.50 10.86 22.14 0.24 -6.26 15 17 C -0.02 -0.84 11.68 83.21 0.97 0.14 15 18 H 0.02 0.96 7.31 -2.39 -0.02 0.95 15 19 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.07 3.77 6.07 -2.39 -0.01 3.75 15 21 H 0.27 14.07 8.31 -92.70 -0.77 13.30 15 22 H 0.35 14.38 8.44 -210.56 -1.78 12.60 15 23 H 0.14 6.25 6.42 -2.91 -0.02 6.23 15 24 H 0.15 4.39 8.06 -2.91 -0.02 4.37 15 25 H 0.17 3.89 8.06 -2.91 -0.02 3.87 15 26 H 0.18 4.92 8.06 -2.91 -0.02 4.90 15 Total: -1.00 -58.05 223.28 3.39 -54.66 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.60 Total: 22.97 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.65 Total: -37.17 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.68 Total: -84.16 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -58.05 3.39 -54.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085830863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.680 kcal (2) G-P(sol) polarization free energy of solvation -58.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds