Wall clock time and date at job start Mon Mar 30 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47091 * 2 1 4 4 N 1.46890 * 109.47644 * 120.00203 * 2 1 3 5 5 C 1.50708 * 109.47078 * 240.00251 * 2 1 3 6 6 C 1.41164 * 126.24624 * 279.68846 * 5 2 1 7 7 C 1.34805 * 107.50703 * 179.82973 * 6 5 2 8 8 N 1.36840 * 108.18774 * 0.42847 * 7 6 5 9 9 C 1.37491 * 125.69822 * 179.70320 * 8 7 6 10 10 H 1.07997 * 120.00141 * 199.24267 * 9 8 7 11 11 C 1.38926 * 119.99810 * 19.24444 * 9 8 7 12 12 N 1.31355 * 119.99612 * 10.45572 * 11 9 8 13 13 Si 1.86798 * 119.99982 * 190.45838 * 11 9 8 14 14 H 1.48502 * 109.47278 * 59.99610 * 13 11 9 15 15 H 1.48500 * 109.46899 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46816 * 299.99605 * 13 11 9 17 17 C 1.34803 * 126.24188 * 99.99753 * 5 2 1 18 18 H 1.08992 * 109.47619 * 59.99833 * 1 2 3 19 19 H 1.08997 * 109.46588 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46800 * 299.99201 * 1 2 3 21 21 H 1.00902 * 111.00707 * 176.04772 * 4 2 1 22 22 H 1.00906 * 111.00091 * 299.99861 * 4 2 1 23 23 H 1.08008 * 126.24463 * 359.97438 * 6 5 2 24 24 H 1.08002 * 125.90229 * 180.17931 * 7 6 5 25 25 H 0.97000 * 119.99640 * 180.02562 * 12 11 9 26 26 H 1.08004 * 125.91210 * 359.97438 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0323 -0.7104 -1.2306 6 6 2.1299 -2.1076 -1.4063 7 6 2.6206 -2.3276 -2.6425 8 7 2.8402 -1.1148 -3.2369 9 6 3.3432 -0.9205 -4.5016 10 1 3.7693 0.0341 -4.7726 11 6 3.3034 -1.9524 -5.4310 12 7 2.6080 -3.0377 -5.1780 13 14 4.2387 -1.7964 -7.0404 14 1 5.6863 -1.6244 -6.7571 15 1 4.0359 -3.0235 -7.8517 16 1 3.7379 -0.6174 -7.7917 17 6 2.4759 -0.1273 -2.3621 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5137 0.8901 21 1 3.0263 -0.7625 1.1908 22 1 1.6963 -0.2350 2.0385 23 1 1.8585 -2.8627 -0.6832 24 1 2.8115 -3.2939 -3.0854 25 1 2.5805 -3.7582 -5.8267 26 1 2.5335 0.9353 -2.5467 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085837142.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:53 Heat of formation + Delta-G solvation = 19.059070 kcal Electronic energy + Delta-G solvation = -10505.256444 eV Core-core repulsion = 8583.468176 eV Total energy + Delta-G solvation = -1921.788267 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.48043 -36.83315 -34.97340 -31.67458 -29.94172 -28.67306 -26.70601 -23.03151 -21.56002 -19.92548 -19.03089 -17.37200 -16.53686 -15.84641 -15.78865 -15.00252 -14.42694 -14.37848 -13.45941 -13.33562 -12.93261 -12.77845 -12.69441 -12.51465 -12.27765 -12.13437 -11.78900 -11.04846 -9.46323 -9.32858 -8.63688 -8.39836 -6.33345 1.32718 1.37135 1.50579 1.97417 2.16452 2.51092 3.05607 3.38830 3.87320 4.33663 4.59571 4.68822 4.71937 4.98042 5.07914 5.13288 5.18043 5.39600 5.49330 5.74761 5.83275 6.05679 6.48439 6.64812 6.77508 6.89472 7.30402 7.72124 8.45228 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.095925 B = 0.010388 C = 0.010076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.826063 B = 2694.882950 C = 2778.293798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.175 3.825 3 H 0.033 0.967 4 N -0.843 5.843 5 C -0.192 4.192 6 C -0.234 4.234 7 C -0.039 4.039 8 N -0.276 5.276 9 C -0.387 4.387 10 H 0.110 0.890 11 C -0.001 4.001 12 N -0.880 5.880 13 Si 1.016 2.984 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.258 1.258 17 C -0.101 4.101 18 H 0.048 0.952 19 H 0.044 0.956 20 H 0.072 0.928 21 H 0.342 0.658 22 H 0.346 0.654 23 H 0.118 0.882 24 H 0.141 0.859 25 H 0.282 0.718 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 4.554 4.292 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.051 0.949 4 N -0.375 5.375 5 C -0.200 4.200 6 C -0.258 4.258 7 C -0.177 4.177 8 N 0.065 4.935 9 C -0.514 4.514 10 H 0.128 0.872 11 C -0.207 4.207 12 N -0.512 5.512 13 Si 0.835 3.165 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.182 1.182 17 C -0.236 4.236 18 H 0.067 0.933 19 H 0.063 0.937 20 H 0.091 0.909 21 H 0.154 0.846 22 H 0.159 0.841 23 H 0.136 0.864 24 H 0.158 0.842 25 H 0.092 0.908 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.133 3.793 3.564 5.206 hybrid contribution 0.732 0.605 -0.628 1.138 sum 0.598 4.398 2.935 5.321 Atomic orbital electron populations 1.21691 0.94266 1.01420 1.01256 1.19362 0.94719 0.92770 0.86849 0.94871 1.58576 1.16467 1.58785 1.03646 1.19183 1.11277 0.93299 0.96222 1.20405 1.13198 0.95708 0.96493 1.21972 1.11108 0.90438 0.94136 1.40478 1.37844 1.05076 1.10060 1.20353 1.40865 1.02407 0.87771 0.87201 1.26626 0.95837 0.94333 1.03871 1.70054 1.35564 1.07534 1.38042 0.84686 0.78342 0.78662 0.74774 1.18500 1.19621 1.18217 1.21674 1.14510 0.93772 0.93674 0.93262 0.93724 0.90944 0.84595 0.84055 0.86438 0.84178 0.90785 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.47 71.98 0.68 -3.45 15 2 C 0.17 6.18 3.81 44.17 0.17 6.35 15 3 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 4 N -0.84 -25.93 9.00 -171.81 -1.55 -27.48 15 5 C -0.19 -8.87 5.06 -19.93 -0.10 -8.97 15 6 C -0.23 -11.88 10.53 22.20 0.23 -11.65 15 7 C -0.04 -2.22 10.05 83.12 0.84 -1.39 15 8 N -0.28 -15.60 2.91 -350.08 -1.02 -16.62 15 9 C -0.39 -21.49 10.08 83.97 0.85 -20.64 15 10 H 0.11 5.68 7.85 -2.91 -0.02 5.65 15 11 C 0.00 -0.07 5.37 84.93 0.46 0.38 15 12 N -0.88 -49.07 10.82 21.65 0.23 -48.84 15 13 Si 1.02 39.97 29.56 68.60 2.03 42.00 15 14 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 15 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 16 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 17 C -0.10 -5.08 11.28 83.12 0.94 -4.14 15 18 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.34 10.43 8.99 -89.69 -0.81 9.63 15 22 H 0.35 8.21 9.04 -89.69 -0.81 7.40 15 23 H 0.12 5.66 8.06 -2.91 -0.02 5.63 15 24 H 0.14 8.30 6.34 -2.91 -0.02 8.28 15 25 H 0.28 14.45 8.31 -92.71 -0.77 13.68 15 26 H 0.15 6.58 8.06 -2.91 -0.02 6.55 15 Total: -1.00 -62.60 228.45 3.32 -59.27 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -0.43 Total: 35.17 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 4.06 Total: -43.51 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -2.33 Total: -92.93 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -62.60 3.32 -59.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085837142.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.330 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds