Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00353 * 3 2 1 6 6 H 1.48495 * 109.46665 * 60.00035 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 O 1.42905 * 109.46996 * 59.99611 * 9 7 2 12 12 C 1.50698 * 109.47576 * 180.02562 * 9 7 2 13 13 C 1.38618 * 120.45300 * 124.71853 * 12 9 7 14 14 C 1.38568 * 118.39986 * 179.76174 * 13 12 9 15 15 N 1.32346 * 119.10735 * 0.51772 * 14 13 12 16 16 C 1.31786 * 120.81932 * 359.74339 * 15 14 13 17 17 N 1.31805 * 121.75205 * 359.97438 * 16 15 14 18 18 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 19 19 H 0.96696 * 114.00036 * 60.00342 * 11 9 7 20 20 H 1.08000 * 120.79452 * 0.02595 * 13 12 9 21 21 H 1.08004 * 120.44551 * 180.25838 * 14 13 12 22 22 H 1.07991 * 119.12395 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5574 0.8880 11 8 0.4297 -2.5740 -1.1689 12 6 2.2301 -3.6447 -0.0015 13 6 2.1685 -4.6214 0.9803 14 6 3.0867 -5.6583 0.9368 15 7 3.9925 -5.6762 -0.0279 16 6 4.0244 -4.7272 -0.9418 17 7 3.1638 -3.7288 -0.9353 18 1 -0.4851 0.8401 0.0004 19 1 0.9221 -2.5281 -1.9998 20 1 1.4202 -4.5774 1.7577 21 1 3.0661 -6.4391 1.6827 22 1 4.7750 -4.7690 -1.7170 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878983.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -6.031283 kcal Electronic energy + Delta-G solvation = -10298.898140 eV Core-core repulsion = 8240.188779 eV Total energy + Delta-G solvation = -2058.709361 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.36137 -35.86936 -32.82512 -32.20889 -31.57683 -27.32190 -24.27881 -23.69649 -21.30766 -17.35298 -16.59720 -16.55490 -14.92117 -14.64639 -14.24560 -14.16014 -13.33463 -12.93703 -12.58209 -11.38821 -11.09778 -10.96057 -10.37398 -10.32227 -9.90100 -9.61915 -9.11754 -8.78519 -8.63733 -8.18652 -6.09378 -4.26106 1.47791 1.67110 3.25126 3.33295 3.38548 4.30247 4.42136 4.59252 4.79436 5.12431 5.23485 5.54066 5.78617 5.97458 6.21580 6.35886 6.97707 7.28758 7.64271 7.79199 8.00495 8.70040 8.74826 9.21800 9.47487 10.95168 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.063690 B = 0.012701 C = 0.011789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.523115 B = 2204.026587 C = 2374.463370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.078 3.922 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.555 4.555 8 H 0.061 0.939 9 C 0.270 3.730 10 H 0.077 0.923 11 O -0.556 6.556 12 C 0.181 3.819 13 C -0.229 4.229 14 C 0.133 3.867 15 N -0.543 5.543 16 C 0.279 3.721 17 N -0.502 5.502 18 H 0.262 0.738 19 H 0.356 0.644 20 H 0.142 0.858 21 H 0.159 0.841 22 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -6.514 1.018 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.593 4.593 8 H 0.079 0.921 9 C 0.212 3.788 10 H 0.095 0.905 11 O -0.358 6.358 12 C 0.035 3.965 13 C -0.251 4.251 14 C -0.032 4.032 15 N -0.259 5.259 16 C -0.009 4.009 17 N -0.217 5.217 18 H 0.072 0.928 19 H 0.201 0.799 20 H 0.160 0.840 21 H 0.176 0.824 22 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.168 -6.484 0.764 7.746 hybrid contribution 0.386 0.948 0.365 1.087 sum 4.554 -5.536 1.129 7.257 Atomic orbital electron populations 1.70074 1.05938 1.26700 1.46911 1.25030 0.94777 0.99274 0.93694 0.86483 0.80223 0.83225 0.77715 1.19640 1.20712 1.20839 1.21483 0.93393 0.90048 1.54396 0.92072 1.18621 0.85749 0.87084 0.87355 0.90548 1.86568 1.37567 1.96055 1.15630 1.23687 0.91682 0.94249 0.86882 1.22862 1.02543 0.97176 1.02552 1.23029 0.89382 0.96124 0.94659 1.68307 1.24283 1.28447 1.04836 1.24918 0.95434 0.85650 0.94922 1.68357 1.04067 1.23080 1.26200 0.92800 0.79932 0.84039 0.82422 0.79673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.87 12.84 55.43 0.71 -24.16 14 2 C 0.08 2.17 5.40 -17.82 -0.10 2.07 14 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 14 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 14 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 7 C -0.55 -15.23 8.58 -34.44 -0.30 -15.53 14 8 H 0.06 1.71 7.70 -52.49 -0.40 1.31 14 9 C 0.27 6.83 3.18 -29.04 -0.09 6.74 14 10 H 0.08 2.00 7.94 -51.93 -0.41 1.59 14 11 O -0.56 -14.44 12.72 -35.23 -0.45 -14.89 14 12 C 0.18 3.94 5.75 -82.24 -0.47 3.47 14 13 C -0.23 -4.14 9.80 -39.32 -0.39 -4.52 14 14 C 0.13 2.12 11.30 -17.21 -0.19 1.93 14 15 N -0.54 -9.39 10.44 -14.59 -0.15 -9.54 14 16 C 0.28 4.97 12.29 -92.15 -1.13 3.84 14 17 N -0.50 -10.60 10.11 -10.80 -0.11 -10.71 14 18 H 0.26 7.14 8.31 -40.82 -0.34 6.80 14 19 H 0.36 8.54 9.03 45.56 0.41 8.95 14 20 H 0.14 2.22 8.01 -52.49 -0.42 1.80 14 21 H 0.16 1.85 8.06 -52.48 -0.42 1.43 14 22 H 0.19 2.60 8.06 -52.49 -0.42 2.18 14 LS Contribution 210.38 15.07 3.17 3.17 Total: -1.00 -30.93 210.38 -5.32 -36.26 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -0.81 Total: 5.71 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.67 Total: -2.00 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.45 Total: -44.40 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.45 Total: -14.89 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -30.93 -5.32 -36.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878983.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.225 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds