Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00353 * 3 2 1 6 6 H 1.48495 * 109.46665 * 60.00035 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 O 1.42905 * 109.46996 * 59.99611 * 9 7 2 12 12 C 1.50698 * 109.47576 * 180.02562 * 9 7 2 13 13 C 1.38618 * 120.45300 * 124.71853 * 12 9 7 14 14 C 1.38568 * 118.39986 * 179.76174 * 13 12 9 15 15 N 1.32346 * 119.10735 * 0.51772 * 14 13 12 16 16 C 1.31786 * 120.81932 * 359.74339 * 15 14 13 17 17 N 1.31805 * 121.75205 * 359.97438 * 16 15 14 18 18 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 19 19 H 0.96696 * 114.00036 * 60.00342 * 11 9 7 20 20 H 1.08000 * 120.79452 * 0.02595 * 13 12 9 21 21 H 1.08004 * 120.44551 * 180.25838 * 14 13 12 22 22 H 1.07991 * 119.12395 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5574 0.8880 11 8 0.4297 -2.5740 -1.1689 12 6 2.2301 -3.6447 -0.0015 13 6 2.1685 -4.6214 0.9803 14 6 3.0867 -5.6583 0.9368 15 7 3.9925 -5.6762 -0.0279 16 6 4.0244 -4.7272 -0.9418 17 7 3.1638 -3.7288 -0.9353 18 1 -0.4851 0.8401 0.0004 19 1 0.9221 -2.5281 -1.9998 20 1 1.4202 -4.5774 1.7577 21 1 3.0661 -6.4391 1.6827 22 1 4.7750 -4.7690 -1.7170 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878983.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -29.160040 kcal Electronic energy + Delta-G solvation = -10299.901078 eV Core-core repulsion = 8240.188779 eV Total energy + Delta-G solvation = -2059.712299 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.80525 -37.77855 -34.37979 -34.29712 -33.05073 -29.25372 -26.05257 -25.13299 -23.03548 -19.25964 -18.20367 -18.14540 -16.71811 -16.28666 -16.00991 -15.66900 -14.93551 -14.74259 -14.21834 -13.43343 -13.04522 -12.83676 -12.16168 -11.81825 -11.58883 -11.42117 -10.83392 -10.68232 -10.42630 -9.87383 -8.19101 -6.43085 0.06989 0.23141 1.38639 1.40704 1.52883 2.37201 2.92279 3.10055 3.32091 3.36874 3.77219 4.20873 4.26113 4.29792 4.67854 4.89829 5.37715 5.56028 5.63003 5.93276 6.21200 6.62882 7.20586 7.26758 7.37486 8.85804 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.063690 B = 0.012701 C = 0.011789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.523115 B = 2204.026587 C = 2374.463370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.050 0.950 9 C 0.269 3.731 10 H 0.058 0.942 11 O -0.570 6.570 12 C 0.152 3.848 13 C -0.232 4.232 14 C 0.149 3.851 15 N -0.542 5.542 16 C 0.276 3.724 17 N -0.532 5.532 18 H 0.265 0.735 19 H 0.360 0.640 20 H 0.161 0.839 21 H 0.208 0.792 22 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -7.292 1.493 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.068 0.932 9 C 0.211 3.789 10 H 0.076 0.924 11 O -0.373 6.373 12 C 0.007 3.993 13 C -0.254 4.254 14 C -0.017 4.017 15 N -0.257 5.257 16 C -0.011 4.011 17 N -0.248 5.248 18 H 0.074 0.926 19 H 0.206 0.794 20 H 0.178 0.822 21 H 0.225 0.775 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.368 -7.264 1.238 9.117 hybrid contribution 0.044 1.078 0.225 1.102 sum 5.412 -6.186 1.463 8.348 Atomic orbital electron populations 1.70177 1.07371 1.27692 1.48041 1.25825 0.95561 1.02658 0.93232 0.85455 0.78727 0.79033 0.78015 1.19563 1.20229 1.19896 1.21687 0.92977 0.91564 1.54226 0.93158 1.18389 0.86047 0.88234 0.86279 0.92414 1.86506 1.38399 1.96241 1.16183 1.23132 0.92227 0.94743 0.89207 1.23064 1.03609 0.96786 1.01962 1.23775 0.87394 0.95948 0.94550 1.68446 1.24426 1.27916 1.04942 1.25543 0.95130 0.84760 0.95695 1.68243 1.04892 1.24878 1.26753 0.92582 0.79418 0.82184 0.77534 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.48 12.84 21.45 0.28 -52.21 14 2 C 0.03 1.68 5.40 84.66 0.46 2.13 14 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 14 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 14 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 14 7 C -0.57 -31.56 8.58 25.60 0.22 -31.34 14 8 H 0.05 2.85 7.70 -2.91 -0.02 2.83 14 9 C 0.27 13.86 3.18 29.10 0.09 13.95 14 10 H 0.06 3.13 7.94 -2.39 -0.02 3.11 14 11 O -0.57 -30.35 12.72 -148.98 -1.90 -32.25 14 12 C 0.15 6.59 5.75 42.57 0.24 6.84 14 13 C -0.23 -7.98 9.80 22.44 0.22 -7.76 14 14 C 0.15 4.22 11.30 84.69 0.96 5.18 14 15 N -0.54 -17.04 10.44 -200.06 -2.09 -19.12 14 16 C 0.28 9.28 12.29 180.88 2.22 11.50 14 17 N -0.53 -22.12 10.11 -188.07 -1.90 -24.02 14 18 H 0.27 14.58 8.31 -92.70 -0.77 13.81 14 19 H 0.36 17.84 9.03 -74.06 -0.67 17.17 14 20 H 0.16 4.75 8.01 -2.91 -0.02 4.73 14 21 H 0.21 3.75 8.06 -2.91 -0.02 3.73 14 22 H 0.22 5.54 8.06 -2.92 -0.02 5.52 14 Total: -1.00 -66.14 210.38 1.40 -64.74 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.57 Total: 16.68 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 4.41 Total: 0.50 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.71 Total: -95.35 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.90 Total: -32.25 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.14 1.40 -64.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878983.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.581 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds