Wall clock time and date at job start Mon Mar 30 2020 01:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48497 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47379 * 300.00156 * 3 2 1 6 6 H 1.48505 * 109.46754 * 60.00040 * 3 2 1 7 7 C 1.40465 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.41020 * 119.99982 * 0.02562 * 7 2 1 10 10 O 1.21435 * 120.00114 * 0.02562 * 9 7 2 11 11 C 1.50695 * 120.00187 * 180.02562 * 9 7 2 12 12 C 1.55028 * 110.88087 * 96.67794 * 11 9 7 13 13 C 1.54265 * 104.28349 * 156.09989 * 12 11 9 14 14 H 1.09002 * 117.75799 * 116.84284 * 13 12 11 15 15 C 1.52993 * 118.20294 * 272.30656 * 13 12 11 16 16 C 1.53005 * 60.37970 * 93.61651 * 15 13 12 17 17 H 1.08996 * 119.29510 * 112.24521 * 16 15 13 18 18 C 1.54266 * 118.19772 * 266.38525 * 16 15 13 19 19 H 0.96993 * 120.00037 * 0.02562 * 1 2 3 20 20 H 1.09009 * 110.81343 * 333.33095 * 11 9 7 21 21 H 1.09003 * 110.36346 * 37.43417 * 12 11 9 22 22 H 1.08999 * 110.52597 * 274.85314 * 12 11 9 23 23 H 1.09000 * 117.45949 * 346.01747 * 15 13 12 24 24 H 1.09004 * 117.44681 * 201.22192 * 15 13 12 25 25 H 1.09002 * 110.48629 * 206.46666 * 18 16 15 26 26 H 1.08998 * 110.48744 * 328.97570 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6992 1.3463 0.0006 5 1 1.8805 2.3964 -1.2124 6 1 1.8804 2.3964 1.2126 7 6 2.0075 -1.2165 0.0005 8 1 3.0874 -1.2164 0.0010 9 6 1.3024 -2.4377 0.0005 10 8 0.0881 -2.4377 -0.0004 11 6 2.0558 -3.7428 0.0017 12 6 2.1851 -4.3049 1.4407 13 6 2.3838 -5.8216 1.2404 14 1 3.3246 -6.2588 1.5748 15 6 1.1400 -6.7069 1.1419 16 6 1.7859 -6.1654 -0.1351 17 1 2.2728 -6.8580 -0.8216 18 6 1.2446 -4.8457 -0.7226 19 1 -0.4850 0.8400 -0.0004 20 1 3.0384 -3.6232 -0.4549 21 1 1.2741 -4.1110 2.0069 22 1 3.0483 -3.8703 1.9447 23 1 0.1881 -6.2722 1.4470 24 1 1.2611 -7.7690 1.3550 25 1 1.4215 -4.8058 -1.7975 26 1 0.1812 -4.7403 -0.5079 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087564395.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:33 Heat of formation + Delta-G solvation = -50.048986 kcal Electronic energy + Delta-G solvation = -10616.182981 eV Core-core repulsion = 8659.105212 eV Total energy + Delta-G solvation = -1957.077769 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.60017 -38.25563 -34.77791 -32.51187 -29.27652 -28.86577 -24.62427 -22.04118 -20.60156 -20.33365 -18.44189 -17.20878 -17.11101 -15.71146 -15.06561 -14.47734 -14.22344 -13.90750 -13.73279 -13.20030 -12.81472 -12.72346 -12.18315 -12.06227 -11.96344 -11.74861 -11.67661 -10.99278 -10.89416 -10.52472 -9.46859 -8.27976 -7.10570 1.32429 1.36408 1.54880 2.15314 2.20731 2.77308 3.40896 3.63746 3.89996 3.98440 4.35593 4.41522 4.55845 4.65005 4.74147 4.87933 4.90679 4.99066 5.05989 5.20022 5.27490 5.32334 5.39404 5.58317 5.97934 6.71977 6.84047 8.29230 8.52673 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.086276 B = 0.011055 C = 0.010528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.463125 B = 2532.083469 C = 2658.861664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.246 1.246 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.346 3.654 10 O -0.597 6.597 11 C -0.129 4.129 12 C -0.075 4.075 13 C -0.159 4.159 14 H 0.137 0.863 15 C -0.152 4.152 16 C -0.165 4.165 17 H 0.134 0.866 18 C -0.084 4.084 19 H 0.281 0.719 20 H 0.082 0.918 21 H 0.034 0.966 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.129 0.871 25 H 0.061 0.939 26 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -6.552 1.236 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.813 3.187 4 H -0.169 1.169 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.245 3.755 10 O -0.490 6.490 11 C -0.149 4.149 12 C -0.113 4.113 13 C -0.177 4.177 14 H 0.155 0.845 15 C -0.189 4.189 16 C -0.182 4.182 17 H 0.151 0.849 18 C -0.122 4.122 19 H 0.091 0.909 20 H 0.100 0.900 21 H 0.053 0.947 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.080 0.920 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.208 -6.521 1.229 9.087 hybrid contribution -0.007 0.897 -0.088 0.901 sum 6.200 -5.624 1.141 8.448 Atomic orbital electron populations 1.70104 1.09960 1.29643 1.32499 1.27301 0.95465 1.05647 0.91003 0.85029 0.79576 0.75146 0.78974 1.16900 1.18859 1.18871 1.21446 0.95893 0.93106 1.49176 0.89748 1.20153 0.88564 0.90045 0.76749 1.90334 1.17743 1.89868 1.51054 1.22738 0.99515 0.95808 0.96820 1.21724 1.00502 0.93945 0.95087 1.23290 0.99150 0.93647 1.01627 0.84507 1.23150 0.95933 1.00021 0.99773 1.23246 1.05425 0.98705 0.90858 0.84856 1.21764 0.98689 0.92785 0.98917 0.90899 0.89953 0.94691 0.90533 0.91213 0.85295 0.92000 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.17 11.72 21.91 0.26 -47.91 15 2 C 0.02 1.36 5.50 85.43 0.47 1.83 15 3 Si 0.99 40.34 29.56 68.60 2.03 42.37 15 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 15 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 7 C -0.57 -32.55 9.20 23.49 0.22 -32.33 15 8 H 0.08 4.42 7.85 -2.91 -0.02 4.39 15 9 C 0.35 20.44 6.03 26.37 0.16 20.60 15 10 O -0.60 -40.39 14.45 -3.51 -0.05 -40.44 15 11 C -0.13 -5.96 3.18 -10.20 -0.03 -5.99 15 12 C -0.07 -2.99 6.07 31.72 0.19 -2.80 15 13 C -0.16 -4.89 6.94 -10.07 -0.07 -4.96 15 14 H 0.14 3.31 8.14 -2.39 -0.02 3.29 15 15 C -0.15 -4.37 10.07 30.59 0.31 -4.06 15 16 C -0.16 -5.18 6.94 -10.07 -0.07 -5.25 15 17 H 0.13 3.38 8.14 -2.39 -0.02 3.36 15 18 C -0.08 -3.52 5.96 31.67 0.19 -3.33 15 19 H 0.28 15.18 8.29 -92.71 -0.77 14.42 15 20 H 0.08 3.52 8.11 -2.38 -0.02 3.50 15 21 H 0.03 1.58 8.04 -2.39 -0.02 1.56 15 22 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.13 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.04 1.99 7.26 -2.39 -0.02 1.98 15 Total: -1.00 -71.94 225.36 4.75 -67.18 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.16 Total: 15.11 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 1.36 Total: -36.30 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.26 Total: -47.91 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.05 Total: -40.44 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -71.94 4.75 -67.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087564395.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.133 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds