Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47606 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47067 * 299.99705 * 3 2 1 6 6 H 1.48497 * 109.47249 * 59.99422 * 3 2 1 7 7 C 1.40048 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.41558 * 119.99785 * 0.02562 * 7 2 1 10 10 N 1.33421 * 119.20199 * 179.97438 * 9 7 2 11 11 C 1.32708 * 120.75604 * 180.02562 * 10 9 7 12 12 N 1.38605 * 120.40767 * 180.02562 * 11 10 9 13 13 C 1.39667 * 119.17550 * 0.27918 * 11 10 9 14 14 C 1.39661 * 118.53849 * 359.48271 * 13 11 10 15 15 N 1.38610 * 120.40924 * 180.23950 * 14 13 11 16 16 N 1.32708 * 119.18061 * 0.51835 * 14 13 11 17 17 H 0.97001 * 120.00326 * 0.02562 * 1 2 3 18 18 H 0.97001 * 120.00540 * 0.02562 * 12 11 10 19 19 H 0.97005 * 119.99736 * 179.72491 * 12 11 10 20 20 H 1.08008 * 120.72582 * 179.72730 * 13 11 10 21 21 H 0.97005 * 119.99661 * 180.28155 * 15 14 13 22 22 H 0.96998 * 120.00289 * 0.27534 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3465 0.0006 5 1 1.8822 2.3964 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0072 -1.2128 0.0005 8 1 3.0873 -1.2127 0.0010 9 6 1.2994 -2.4387 0.0005 10 7 1.9826 -3.5848 0.0005 11 6 1.3504 -4.7517 0.0000 12 7 2.0673 -5.9379 0.0006 13 6 -0.0461 -4.7694 -0.0065 14 6 -0.7289 -3.5512 -0.0011 15 7 -2.1147 -3.5236 -0.0022 16 7 -0.0346 -2.4202 -0.0006 17 1 -0.4851 0.8400 -0.0004 18 1 3.0372 -5.9186 0.0017 19 1 1.5992 -6.7875 0.0042 20 1 -0.5861 -5.7049 -0.0114 21 1 -2.5829 -2.6740 -0.0026 22 1 -2.6164 -4.3538 -0.0027 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104555992.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = 20.759878 kcal Electronic energy + Delta-G solvation = -10328.582654 eV Core-core repulsion = 8303.327796 eV Total energy + Delta-G solvation = -2025.254858 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.60530 -36.36028 -36.01381 -34.24389 -31.16623 -30.28119 -28.00879 -23.61323 -22.97692 -19.72312 -18.81541 -17.64244 -16.84279 -16.45512 -15.93122 -15.49237 -15.08790 -14.62677 -14.45280 -13.05497 -12.92887 -12.62175 -12.56704 -11.87444 -11.65779 -10.65793 -10.60594 -9.16557 -8.94116 -8.70508 -8.27646 -6.64899 1.03427 1.45353 1.59345 1.59995 1.62063 2.28171 2.92595 2.94739 3.26051 4.17908 4.53616 4.88433 4.90580 5.22715 5.27954 5.60997 6.22272 6.45674 6.64958 6.71252 6.79506 7.15135 7.16381 7.76261 8.45486 8.66352 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.054074 B = 0.014867 C = 0.011709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.680059 B = 1882.886192 C = 2390.723546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.084 0.916 9 C 0.424 3.576 10 N -0.697 5.697 11 C 0.444 3.556 12 N -0.839 5.839 13 C -0.472 4.472 14 C 0.431 3.569 15 N -0.839 5.839 16 N -0.612 5.612 17 H 0.279 0.721 18 H 0.400 0.600 19 H 0.413 0.587 20 H 0.127 0.873 21 H 0.399 0.601 22 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 -3.613 0.009 3.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.195 4.195 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.182 3.818 10 N -0.432 5.432 11 C 0.196 3.804 12 N -0.385 5.385 13 C -0.507 4.507 14 C 0.182 3.818 15 N -0.384 5.384 16 N -0.343 5.343 17 H 0.090 0.910 18 H 0.229 0.771 19 H 0.244 0.756 20 H 0.145 0.855 21 H 0.227 0.773 22 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.267 -2.612 0.006 2.903 hybrid contribution -0.460 -0.711 0.006 0.847 sum -1.727 -3.323 0.012 3.745 Atomic orbital electron populations 1.70256 1.08769 1.28935 1.28874 1.26976 0.95870 1.04296 0.92398 0.84946 0.79090 0.75307 0.78939 1.18179 1.18761 1.18769 1.19582 0.94497 0.88855 1.45504 0.89776 1.19788 0.85287 0.90718 0.86007 1.68244 1.40863 0.97776 1.36285 1.18467 0.88551 0.87430 0.85925 1.41770 1.08924 1.03604 1.84244 1.20846 0.93583 0.97651 1.38612 1.18900 0.86975 0.89927 0.85953 1.41793 1.01458 1.11157 1.84041 1.68919 1.08230 1.25926 1.31246 0.91018 0.77059 0.75600 0.85496 0.77273 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.71 11.42 21.84 0.25 -40.46 14 2 C 0.03 1.46 5.50 85.30 0.47 1.93 14 3 Si 1.00 39.35 29.56 68.60 2.03 41.38 14 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 14 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 14 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 14 7 C -0.45 -26.33 9.37 23.53 0.22 -26.11 14 8 H 0.08 4.81 7.85 -2.91 -0.02 4.78 14 9 C 0.42 25.80 7.37 135.17 1.00 26.79 14 10 N -0.70 -39.45 10.38 -191.73 -1.99 -41.44 14 11 C 0.44 21.34 7.81 133.24 1.04 22.39 14 12 N -0.84 -29.27 9.06 -55.18 -0.50 -29.77 14 13 C -0.47 -21.82 9.92 22.96 0.23 -21.60 14 14 C 0.43 21.54 7.81 133.23 1.04 22.58 14 15 N -0.84 -32.03 9.06 -55.18 -0.50 -32.53 14 16 N -0.61 -35.76 7.89 -191.73 -1.51 -37.27 14 17 H 0.28 13.53 8.29 -92.71 -0.77 12.76 14 18 H 0.40 12.89 8.95 -92.71 -0.83 12.06 14 19 H 0.41 11.11 8.84 -92.70 -0.82 10.29 14 20 H 0.13 4.86 8.06 -2.91 -0.02 4.84 14 21 H 0.40 14.92 8.95 -92.70 -0.83 14.09 14 22 H 0.41 12.13 8.84 -92.71 -0.82 11.31 14 Total: -1.00 -71.25 206.26 -0.23 -71.48 By element: Atomic # 1 Polarization: 44.62 SS G_CDS: -1.99 Total: 42.63 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 3.99 Total: 25.98 kcal Atomic # 7 Polarization: -177.21 SS G_CDS: -4.25 Total: -181.46 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -71.25 -0.23 -71.48 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104555992.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.239 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds