Wall clock time and date at job start Mon Mar 30 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32337 * 120.26266 * 2 1 4 4 N 1.41155 * 119.46405 * 179.97438 * 3 2 1 5 5 C 1.46504 * 120.23189 * 165.79642 * 4 3 2 6 6 C 1.50702 * 109.47029 * 90.00294 * 5 4 3 7 7 H 1.07997 * 119.99812 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00214 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99462 * 359.97438 * 8 6 5 10 10 Si 1.86789 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47369 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47107 * 120.00260 * 10 8 6 13 13 H 1.48499 * 109.47274 * 239.99995 * 10 8 6 14 14 C 1.41159 * 119.52621 * 345.77552 * 4 3 2 15 15 C 1.32324 * 119.46965 * 14.23045 * 14 4 3 16 16 N 1.41160 * 119.46905 * 359.97438 * 15 14 4 17 17 H 1.09008 * 109.47293 * 90.00019 * 1 2 3 18 18 H 1.09001 * 109.46715 * 209.99545 * 1 2 3 19 19 H 1.08997 * 109.47328 * 329.99783 * 1 2 3 20 20 H 1.07993 * 120.26521 * 0.26002 * 3 2 1 21 21 H 1.09004 * 109.46901 * 210.00140 * 5 4 3 22 22 H 1.08996 * 109.47599 * 330.00141 * 5 4 3 23 23 H 0.97007 * 119.99565 * 179.97438 * 9 8 6 24 24 H 1.07999 * 120.26240 * 194.24377 * 14 4 3 25 25 H 1.08001 * 120.26584 * 179.97438 * 15 14 4 26 26 H 0.97004 * 120.24202 * 165.80001 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1430 0.0000 4 7 3.5854 1.1234 0.0005 5 6 4.3402 2.3400 -0.3100 6 6 4.6034 3.1060 0.9608 7 1 4.2439 2.7249 1.9053 8 6 5.3030 4.2933 0.9178 9 7 5.7410 4.7570 -0.2322 10 14 5.6286 5.2431 2.4929 11 1 5.0359 4.5133 3.6426 12 1 7.0934 5.3787 2.6954 13 1 5.0157 6.5920 2.3933 14 6 4.2642 -0.0768 0.3029 15 6 3.5974 -1.2197 0.3028 16 7 2.2185 -1.2191 0.0009 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 -0.8901 0.5138 19 1 -0.3634 0.8899 0.5138 20 1 1.6426 2.0832 0.0042 21 1 5.2886 2.0704 -0.7748 22 1 3.7631 2.9606 -0.9954 23 1 6.2330 5.5925 -0.2625 24 1 5.3194 -0.0622 0.5327 25 1 4.1041 -2.1456 0.5319 26 1 1.7630 -2.0505 -0.2048 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104630332.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:29 Heat of formation + Delta-G solvation = 45.780525 kcal Electronic energy + Delta-G solvation = -10394.534525 eV Core-core repulsion = 8473.904987 eV Total energy + Delta-G solvation = -1920.629538 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.41039 -34.20750 -32.37714 -31.85235 -28.04272 -27.10624 -24.63647 -21.95033 -20.94187 -17.25165 -16.40479 -16.00470 -15.35541 -14.47547 -13.73395 -13.35871 -12.71728 -12.58585 -12.19623 -11.72287 -11.48419 -11.30885 -11.04055 -10.60737 -10.50595 -10.04527 -9.81685 -8.71041 -8.55266 -8.44415 -6.10748 -5.00489 -4.10867 2.77528 3.28206 3.35850 3.41313 3.90634 4.20759 4.41615 4.58487 5.27255 5.70139 5.72255 5.94364 6.00736 6.18854 6.23481 6.52842 7.07256 7.16064 7.35441 7.39856 7.87793 8.22057 8.26097 8.39038 8.83249 8.95953 9.06994 9.56797 11.01938 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061410 B = 0.010539 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.845628 B = 2656.176208 C = 2781.225265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.004 4.004 3 C 0.066 3.934 4 N -0.581 5.581 5 C 0.260 3.740 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.061 3.939 15 C -0.029 4.029 16 N -0.719 5.719 17 H 0.058 0.942 18 H 0.054 0.946 19 H 0.066 0.934 20 H 0.134 0.866 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.262 0.738 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 -8.221 0.496 10.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.053 4.053 4 N -0.290 5.290 5 C 0.139 3.861 6 C -0.571 4.571 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.057 4.057 15 C -0.146 4.146 16 N -0.355 5.355 17 H 0.076 0.924 18 H 0.073 0.927 19 H 0.085 0.915 20 H 0.152 0.848 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.149 0.851 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.983 -7.802 0.435 9.842 hybrid contribution 0.195 0.359 0.967 1.050 sum -5.788 -7.443 1.402 9.533 Atomic orbital electron populations 1.20393 0.90752 1.01930 1.01276 1.19429 0.92104 0.85640 1.13043 1.21021 0.84165 0.96209 1.03887 1.44912 1.02000 1.09235 1.72861 1.19134 0.91050 0.80337 0.95531 1.21774 1.34903 1.05992 0.94464 0.92257 1.24995 0.95590 0.97326 0.96364 1.69954 1.37906 1.21308 1.24441 0.86472 0.77924 0.79724 0.83505 1.19787 1.20941 1.20930 1.21280 0.96843 0.85137 1.02447 1.20853 0.84583 0.96905 1.12213 1.41752 1.06432 1.05757 1.81535 0.92366 0.92663 0.91546 0.84840 0.95363 0.95382 0.92796 0.84707 0.85088 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 10.19 36.01 0.37 -0.78 15 2 C 0.00 -0.06 6.85 -80.21 -0.55 -0.61 15 3 C 0.07 1.39 10.11 -15.17 -0.15 1.24 15 4 N -0.58 -13.71 2.89 -116.82 -0.34 -14.05 15 5 C 0.26 6.94 5.47 -5.19 -0.03 6.91 15 6 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 15 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 9 N -0.90 -26.49 13.29 55.43 0.74 -25.75 15 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 15 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 14 C 0.06 1.29 10.50 -15.17 -0.16 1.13 15 15 C -0.03 -0.51 11.29 -15.17 -0.17 -0.68 15 16 N -0.72 -12.45 5.75 -7.91 -0.05 -12.50 15 17 H 0.06 0.71 8.14 -51.92 -0.42 0.29 15 18 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.07 0.84 8.07 -51.93 -0.42 0.42 15 20 H 0.13 2.71 8.06 -52.49 -0.42 2.28 15 21 H 0.03 0.79 8.06 -51.93 -0.42 0.37 15 22 H 0.03 0.79 8.06 -51.93 -0.42 0.37 15 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 24 H 0.14 2.66 8.06 -52.49 -0.42 2.24 15 25 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.39 5.52 8.94 -40.82 -0.36 5.16 15 LS Contribution 231.76 15.07 3.49 3.49 Total: -1.00 -31.10 231.76 -5.57 -36.67 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.28 Total: 2.17 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.12 Total: -6.74 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.35 Total: -52.30 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.10 -5.57 -36.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104630332.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.455 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds