Wall clock time and date at job start Mon Mar 30 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32337 * 120.26266 * 2 1 4 4 N 1.41155 * 119.46405 * 179.97438 * 3 2 1 5 5 C 1.46504 * 120.23189 * 165.79642 * 4 3 2 6 6 C 1.50702 * 109.47029 * 90.00294 * 5 4 3 7 7 H 1.07997 * 119.99812 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00214 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99462 * 359.97438 * 8 6 5 10 10 Si 1.86789 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47369 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47107 * 120.00260 * 10 8 6 13 13 H 1.48499 * 109.47274 * 239.99995 * 10 8 6 14 14 C 1.41159 * 119.52621 * 345.77552 * 4 3 2 15 15 C 1.32324 * 119.46965 * 14.23045 * 14 4 3 16 16 N 1.41160 * 119.46905 * 359.97438 * 15 14 4 17 17 H 1.09008 * 109.47293 * 90.00019 * 1 2 3 18 18 H 1.09001 * 109.46715 * 209.99545 * 1 2 3 19 19 H 1.08997 * 109.47328 * 329.99783 * 1 2 3 20 20 H 1.07993 * 120.26521 * 0.26002 * 3 2 1 21 21 H 1.09004 * 109.46901 * 210.00140 * 5 4 3 22 22 H 1.08996 * 109.47599 * 330.00141 * 5 4 3 23 23 H 0.97007 * 119.99565 * 179.97438 * 9 8 6 24 24 H 1.07999 * 120.26240 * 194.24377 * 14 4 3 25 25 H 1.08001 * 120.26584 * 179.97438 * 15 14 4 26 26 H 0.97004 * 120.24202 * 165.80001 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1430 0.0000 4 7 3.5854 1.1234 0.0005 5 6 4.3402 2.3400 -0.3100 6 6 4.6034 3.1060 0.9608 7 1 4.2439 2.7249 1.9053 8 6 5.3030 4.2933 0.9178 9 7 5.7410 4.7570 -0.2322 10 14 5.6286 5.2431 2.4929 11 1 5.0359 4.5133 3.6426 12 1 7.0934 5.3787 2.6954 13 1 5.0157 6.5920 2.3933 14 6 4.2642 -0.0768 0.3029 15 6 3.5974 -1.2197 0.3028 16 7 2.2185 -1.2191 0.0009 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 -0.8901 0.5138 19 1 -0.3634 0.8899 0.5138 20 1 1.6426 2.0832 0.0042 21 1 5.2886 2.0704 -0.7748 22 1 3.7631 2.9606 -0.9954 23 1 6.2330 5.5925 -0.2625 24 1 5.3194 -0.0622 0.5327 25 1 4.1041 -2.1456 0.5319 26 1 1.7630 -2.0505 -0.2048 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104630332.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:29 Heat of formation + Delta-G solvation = 25.897382 kcal Electronic energy + Delta-G solvation = -10395.396723 eV Core-core repulsion = 8473.904987 eV Total energy + Delta-G solvation = -1921.491736 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.96288 -36.03470 -34.31342 -33.34526 -29.92734 -28.53289 -26.46794 -23.81213 -22.50521 -18.77546 -18.60718 -17.57223 -17.09295 -16.27359 -15.34120 -14.98118 -14.34046 -14.18303 -13.57886 -13.32191 -13.29445 -12.96511 -12.74883 -12.37408 -12.33024 -11.90697 -11.78018 -10.65597 -10.55384 -10.02966 -8.27730 -6.59591 -6.38042 1.26054 1.37646 1.37776 1.51641 2.32009 2.42207 2.70515 3.05785 3.06154 4.36688 4.52603 4.63820 4.74210 4.88846 4.94547 5.10271 5.17087 5.24909 5.63442 5.66819 5.77098 6.10339 6.58346 6.65150 6.90623 7.33038 7.37529 7.52208 8.84517 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061410 B = 0.010539 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.845628 B = 2656.176208 C = 2781.225265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.027 3.973 3 C 0.006 3.994 4 N -0.601 5.601 5 C 0.278 3.722 6 C -0.548 4.548 7 H 0.048 0.952 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.271 1.271 12 H -0.274 1.274 13 H -0.274 1.274 14 C 0.009 3.991 15 C 0.003 3.997 16 N -0.715 5.715 17 H 0.078 0.922 18 H 0.079 0.921 19 H 0.073 0.927 20 H 0.127 0.873 21 H 0.003 0.997 22 H 0.002 0.998 23 H 0.268 0.732 24 H 0.133 0.867 25 H 0.176 0.824 26 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 -9.637 1.499 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.111 4.111 4 N -0.313 5.313 5 C 0.156 3.844 6 C -0.587 4.587 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.196 1.196 12 H -0.199 1.199 13 H -0.199 1.199 14 C -0.108 4.108 15 C -0.115 4.115 16 N -0.351 5.351 17 H 0.096 0.904 18 H 0.098 0.902 19 H 0.092 0.908 20 H 0.144 0.856 21 H 0.021 0.979 22 H 0.020 0.980 23 H 0.077 0.923 24 H 0.150 0.850 25 H 0.193 0.807 26 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.169 -9.283 1.433 11.816 hybrid contribution 0.463 0.639 0.602 0.992 sum -6.706 -8.644 2.035 11.128 Atomic orbital electron populations 1.20511 0.87004 1.03543 1.03040 1.20102 0.94358 0.84908 1.07891 1.21178 0.83482 0.97507 1.08949 1.44647 1.02806 1.08846 1.75018 1.18610 0.89880 0.81641 0.94247 1.21955 1.35405 1.06816 0.94527 0.93404 1.25881 0.95008 0.98134 0.99941 1.70064 1.38306 1.21885 1.26637 0.85350 0.78132 0.78229 0.78966 1.19584 1.19900 1.19892 1.21501 0.97511 0.85443 1.06378 1.21455 0.84703 0.97354 1.07941 1.42013 1.06427 1.06462 1.80172 0.90376 0.90192 0.90781 0.85552 0.97881 0.98035 0.92312 0.84972 0.80704 0.75653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.19 71.24 0.73 -1.22 15 2 C 0.03 0.92 6.85 39.97 0.27 1.19 15 3 C 0.01 0.24 10.11 82.10 0.83 1.07 15 4 N -0.60 -29.41 2.89 -523.50 -1.51 -30.92 15 5 C 0.28 15.76 5.47 85.63 0.47 16.23 15 6 C -0.55 -32.48 9.39 25.60 0.24 -32.24 15 7 H 0.05 2.88 7.81 -2.91 -0.02 2.86 15 8 C 0.01 0.54 5.46 84.65 0.46 1.00 15 9 N -0.93 -56.22 13.29 21.45 0.28 -55.93 15 10 Si 0.97 45.05 29.54 68.60 2.03 47.07 15 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 14 C 0.01 0.37 10.50 82.11 0.86 1.23 15 15 C 0.00 0.09 11.29 82.11 0.93 1.02 15 16 N -0.71 -22.39 5.75 -178.94 -1.03 -23.42 15 17 H 0.08 1.61 8.14 -2.38 -0.02 1.59 15 18 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 19 H 0.07 1.68 8.07 -2.39 -0.02 1.66 15 20 H 0.13 5.37 8.06 -2.91 -0.02 5.35 15 21 H 0.00 0.19 8.06 -2.39 -0.02 0.17 15 22 H 0.00 0.10 8.06 -2.39 -0.02 0.08 15 23 H 0.27 15.07 8.31 -92.70 -0.77 14.30 15 24 H 0.13 5.40 8.06 -2.91 -0.02 5.38 15 25 H 0.18 4.28 8.06 -2.91 -0.02 4.26 15 26 H 0.41 9.73 8.94 -92.71 -0.83 8.90 15 Total: -1.00 -68.53 231.76 4.89 -63.64 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.33 Total: 11.28 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.79 Total: -11.72 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -2.25 Total: -110.27 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.53 4.89 -63.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104630332.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.533 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds