Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30148 * 125.20279 * 304.70102 * 4 3 2 6 6 C 1.35974 * 109.13556 * 179.83584 * 5 4 3 7 7 C 1.41224 * 126.44229 * 180.13545 * 6 5 4 8 8 H 1.08001 * 119.99979 * 180.33490 * 7 6 5 9 9 C 1.39717 * 119.99838 * 0.33156 * 7 6 5 10 10 N 1.31007 * 119.99977 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99614 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47264 * 89.99970 * 11 9 7 13 13 H 1.48502 * 109.47220 * 210.00263 * 11 9 7 14 14 H 1.48507 * 109.47247 * 330.00176 * 11 9 7 15 15 C 1.39088 * 107.11480 * 0.41507 * 6 5 4 16 16 N 1.35969 * 125.20489 * 124.99715 * 4 3 2 17 17 H 0.97008 * 126.10499 * 359.97438 * 16 4 3 18 18 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 22 22 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 24 24 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 25 25 H 0.97006 * 119.99873 * 180.02562 * 10 9 7 26 26 H 1.08005 * 126.81290 * 179.71741 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2976 0.8371 0.8733 6 6 5.6041 1.0484 0.5613 7 6 6.7250 0.5559 1.2652 8 1 7.7226 0.7936 0.9264 9 6 6.5433 -0.2389 2.3998 10 7 5.3332 -0.5276 2.8104 11 14 8.0259 -0.8898 3.3312 12 1 8.4178 0.0845 4.3812 13 1 7.6818 -2.1882 3.9643 14 1 9.1570 -1.0831 2.3885 15 6 5.6290 1.8463 -0.5778 16 7 4.3304 2.0800 -0.9110 17 1 4.0192 2.6068 -1.6637 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 5.2071 -1.0792 3.5984 26 1 6.5052 2.2089 -1.0949 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104631825.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 33.436397 kcal Electronic energy + Delta-G solvation = -10431.279431 eV Core-core repulsion = 8510.114611 eV Total energy + Delta-G solvation = -1921.164820 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.81849 -34.39502 -33.11182 -30.47012 -29.03631 -26.52816 -23.98065 -21.18777 -19.56154 -18.87128 -17.19715 -15.30609 -14.66507 -14.52928 -13.43307 -13.21817 -12.74128 -12.33329 -12.13620 -11.58813 -11.03263 -10.93277 -10.82950 -10.66733 -10.21822 -10.08511 -9.81283 -9.15832 -7.99576 -7.95274 -6.82101 -6.11214 -3.90449 3.20213 3.30793 3.34655 3.66246 4.28862 4.62717 4.71144 5.47063 5.53211 5.57573 5.82715 5.90942 6.08011 6.21326 6.27584 6.43814 6.66657 6.76981 6.96963 7.36019 7.59665 7.80937 8.01275 8.56631 9.00637 9.24293 9.44497 10.14961 10.83036 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052128 B = 0.012222 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.010024 B = 2290.444400 C = 2761.173461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.017 4.017 4 C 0.156 3.844 5 N -0.449 5.449 6 C 0.194 3.806 7 C -0.457 4.457 8 H 0.073 0.927 9 C 0.076 3.924 10 N -0.774 5.774 11 Si 0.899 3.101 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.235 4.235 16 N -0.583 5.583 17 H 0.388 0.612 18 H 0.052 0.948 19 H 0.046 0.954 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.264 0.736 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 1.694 -4.066 7.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.057 4.057 4 C -0.106 4.106 5 N -0.174 5.174 6 C 0.070 3.930 7 C -0.493 4.493 8 H 0.091 0.909 9 C -0.142 4.142 10 N -0.400 5.400 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.362 4.362 16 N -0.192 5.192 17 H 0.222 0.778 18 H 0.071 0.929 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.035 1.080 -3.178 6.906 hybrid contribution 0.988 0.483 -0.656 1.281 sum -5.047 1.563 -3.835 6.528 Atomic orbital electron populations 1.21792 0.96665 1.01115 1.01090 1.21403 0.94012 0.96384 1.03386 1.19705 0.87328 0.97563 1.01074 1.23362 0.94352 1.01112 0.91807 1.71132 1.02191 1.21347 1.22687 1.18514 0.90454 0.93275 0.90739 1.18440 0.91713 1.29677 1.09436 0.90901 1.25746 0.95981 0.95372 0.97107 1.70106 1.21033 1.28688 1.20200 0.86495 0.82650 0.78396 0.79970 1.20067 1.20734 1.19170 1.22392 0.84997 1.20415 1.08419 1.42620 1.07012 1.44136 1.25423 0.77843 0.92885 0.93468 0.93080 0.90068 0.92655 0.92586 0.90972 0.92524 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 15 2 C -0.11 -1.97 5.88 -26.73 -0.16 -2.12 15 3 C -0.02 -0.31 5.84 -27.89 -0.16 -0.48 15 4 C 0.16 3.69 7.40 -154.86 -1.15 2.54 15 5 N -0.45 -12.87 9.46 -8.18 -0.08 -12.95 15 6 C 0.19 5.72 6.69 -84.58 -0.57 5.15 15 7 C -0.46 -13.51 9.38 -37.90 -0.36 -13.86 15 8 H 0.07 2.04 7.84 -52.49 -0.41 1.62 15 9 C 0.08 2.15 5.49 -17.35 -0.10 2.05 15 10 N -0.77 -22.81 11.94 55.54 0.66 -22.14 15 11 Si 0.90 20.71 29.56 -169.99 -5.02 15.68 15 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 14 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 15 C -0.23 -5.98 12.11 -15.35 -0.19 -6.16 15 16 N -0.58 -12.86 6.12 -9.24 -0.06 -12.91 15 17 H 0.39 6.76 8.96 -40.82 -0.37 6.39 15 18 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 22 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.26 7.16 8.30 -40.82 -0.34 6.83 15 26 H 0.14 3.24 8.06 -52.48 -0.42 2.82 15 LS Contribution 231.25 15.07 3.48 3.48 Total: -1.00 -32.85 231.25 -6.60 -39.45 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.29 Total: 3.88 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.30 Total: -14.49 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.53 Total: -48.01 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.85 -6.60 -39.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104631825.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.888 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds