Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30148 * 125.20279 * 304.70102 * 4 3 2 6 6 C 1.35974 * 109.13556 * 179.83584 * 5 4 3 7 7 C 1.41224 * 126.44229 * 180.13545 * 6 5 4 8 8 H 1.08001 * 119.99979 * 180.33490 * 7 6 5 9 9 C 1.39717 * 119.99838 * 0.33156 * 7 6 5 10 10 N 1.31007 * 119.99977 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99614 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47264 * 89.99970 * 11 9 7 13 13 H 1.48502 * 109.47220 * 210.00263 * 11 9 7 14 14 H 1.48507 * 109.47247 * 330.00176 * 11 9 7 15 15 C 1.39088 * 107.11480 * 0.41507 * 6 5 4 16 16 N 1.35969 * 125.20489 * 124.99715 * 4 3 2 17 17 H 0.97008 * 126.10499 * 359.97438 * 16 4 3 18 18 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 22 22 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 24 24 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 25 25 H 0.97006 * 119.99873 * 180.02562 * 10 9 7 26 26 H 1.08005 * 126.81290 * 179.71741 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2976 0.8371 0.8733 6 6 5.6041 1.0484 0.5613 7 6 6.7250 0.5559 1.2652 8 1 7.7226 0.7936 0.9264 9 6 6.5433 -0.2389 2.3998 10 7 5.3332 -0.5276 2.8104 11 14 8.0259 -0.8898 3.3312 12 1 8.4178 0.0845 4.3812 13 1 7.6818 -2.1882 3.9643 14 1 9.1570 -1.0831 2.3885 15 6 5.6290 1.8463 -0.5778 16 7 4.3304 2.0800 -0.9110 17 1 4.0192 2.6068 -1.6637 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 5.2071 -1.0792 3.5984 26 1 6.5052 2.2089 -1.0949 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104631825.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 11.519388 kcal Electronic energy + Delta-G solvation = -10432.229823 eV Core-core repulsion = 8510.114611 eV Total energy + Delta-G solvation = -1922.115212 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.75516 -35.86651 -35.10633 -32.47875 -30.77805 -28.29736 -25.85835 -22.62177 -21.56871 -20.71444 -19.18624 -17.24316 -16.57146 -15.98839 -15.13296 -14.81753 -14.54055 -14.18133 -13.68342 -12.96477 -12.83208 -12.74450 -12.42333 -12.11117 -11.95165 -11.76403 -11.51270 -11.17944 -10.01769 -9.96673 -8.85589 -8.18469 -6.05713 1.37144 1.42724 1.56853 1.76249 2.36348 2.68044 2.89654 3.74680 3.98832 4.20388 4.29730 4.55168 4.77380 4.89024 4.89607 5.06715 5.26591 5.28828 5.41952 5.53605 5.60476 5.83158 5.97539 6.45066 7.04477 7.20853 7.44878 8.17058 8.77562 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052128 B = 0.012222 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.010024 B = 2290.444400 C = 2761.173461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.015 4.015 4 C 0.157 3.843 5 N -0.500 5.500 6 C 0.139 3.861 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.023 3.977 10 N -0.815 5.815 11 Si 0.981 3.019 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.259 1.259 15 C -0.229 4.229 16 N -0.566 5.566 17 H 0.414 0.586 18 H 0.059 0.941 19 H 0.072 0.928 20 H 0.059 0.941 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.267 0.733 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 2.220 -4.867 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.054 4.054 4 C -0.106 4.106 5 N -0.225 5.225 6 C 0.015 3.985 7 C -0.532 4.532 8 H 0.092 0.908 9 C -0.190 4.190 10 N -0.443 5.443 11 Si 0.803 3.197 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.183 1.183 15 C -0.357 4.357 16 N -0.176 5.176 17 H 0.252 0.748 18 H 0.078 0.922 19 H 0.091 0.909 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.673 1.638 -4.024 7.962 hybrid contribution 1.106 0.399 -0.527 1.289 sum -5.566 2.037 -4.551 7.473 Atomic orbital electron populations 1.21710 0.93007 1.02278 1.02643 1.21313 0.97086 0.95362 1.00967 1.19939 0.83528 0.98545 1.03390 1.24297 0.96546 0.99188 0.90579 1.71034 1.02569 1.23633 1.25268 1.19058 0.91224 0.95419 0.92801 1.18829 0.92121 1.31320 1.10960 0.90752 1.26687 0.99407 0.95222 0.97731 1.70250 1.23502 1.29656 1.20891 0.85244 0.78320 0.77804 0.78329 1.19232 1.19897 1.18326 1.22663 0.86910 1.18910 1.07246 1.42516 1.05725 1.43538 1.25796 0.74764 0.92232 0.90939 0.92234 0.94269 0.93413 0.88226 0.90453 0.92294 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 15 2 C -0.11 -3.65 5.88 30.59 0.18 -3.47 15 3 C -0.01 -0.51 5.84 29.85 0.17 -0.34 15 4 C 0.16 7.35 7.40 137.93 1.02 8.37 15 5 N -0.50 -29.32 9.46 -179.79 -1.70 -31.02 15 6 C 0.14 8.38 6.69 39.44 0.26 8.65 15 7 C -0.50 -30.17 9.38 23.36 0.22 -29.96 15 8 H 0.07 4.26 7.84 -2.91 -0.02 4.24 15 9 C 0.02 1.34 5.49 85.17 0.47 1.81 15 10 N -0.82 -49.66 11.94 21.79 0.26 -49.40 15 11 Si 0.98 43.40 29.56 68.60 2.03 45.42 15 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 14 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 15 C -0.23 -11.52 12.11 84.24 1.02 -10.50 15 16 N -0.57 -23.97 6.12 -183.15 -1.12 -25.09 15 17 H 0.41 13.11 8.96 -92.70 -0.83 12.28 15 18 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 19 H 0.07 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.27 14.96 8.30 -92.70 -0.77 14.19 15 26 H 0.16 7.27 8.06 -2.91 -0.02 7.24 15 Total: -1.00 -73.57 231.25 3.86 -69.71 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.34 Total: 18.41 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.06 Total: -28.03 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -2.56 Total: -105.51 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.57 3.86 -69.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104631825.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.225 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds