Wall clock time and date at job start Mon Mar 30 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31237 * 125.46543 * 2 1 4 4 N 1.40018 * 109.11596 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.20290 * 180.02562 * 4 3 2 6 6 C 1.37456 * 107.59395 * 0.02562 * 4 3 2 7 7 C 1.40241 * 126.66221 * 179.97438 * 6 4 3 8 8 H 1.07993 * 120.00447 * 138.98090 * 7 6 4 9 9 C 1.40170 * 119.99772 * 318.98637 * 7 6 4 10 10 N 1.30757 * 119.99839 * 342.93806 * 9 7 6 11 11 Si 1.86795 * 120.00005 * 162.94388 * 9 7 6 12 12 H 1.48503 * 109.47133 * 59.99681 * 11 9 7 13 13 H 1.48499 * 109.47160 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47129 * 299.99597 * 11 9 7 15 15 C 1.38706 * 125.45912 * 180.02562 * 2 1 3 16 16 C 1.50693 * 126.23196 * 0.23855 * 15 2 1 17 17 H 1.08993 * 109.47029 * 269.97627 * 1 2 3 18 18 H 1.08999 * 109.46937 * 29.97729 * 1 2 3 19 19 H 1.09000 * 109.47325 * 149.97019 * 1 2 3 20 20 H 1.09007 * 109.47339 * 275.57119 * 5 4 3 21 21 H 1.09002 * 109.47325 * 35.56933 * 5 4 3 22 22 H 1.09002 * 109.47037 * 155.57365 * 5 4 3 23 23 H 0.97008 * 120.00047 * 185.07407 * 10 9 7 24 24 H 1.09001 * 109.47597 * 269.69263 * 16 15 2 25 25 H 1.09003 * 109.47097 * 29.69210 * 16 15 2 26 26 H 1.09009 * 109.47246 * 149.68671 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0689 0.0000 4 7 3.6120 0.6747 -0.0006 5 6 4.7751 1.5655 -0.0003 6 6 3.6418 -0.6995 -0.0015 7 6 4.7847 -1.5122 -0.0029 8 1 4.8163 -2.4007 0.6103 9 6 5.8861 -1.1714 -0.8000 10 7 5.7457 -0.3135 -1.7768 11 14 7.5545 -1.9427 -0.4671 12 1 7.4543 -3.4179 -0.6054 13 1 8.5448 -1.4207 -1.4427 14 1 7.9906 -1.6033 0.9112 15 6 2.3116 -1.1298 -0.0005 16 6 1.8383 -2.5604 -0.0062 17 1 -0.3633 -0.0004 1.0276 18 1 -0.3633 0.8902 -0.5135 19 1 -0.3634 -0.8897 -0.5143 20 1 5.0027 1.8664 -1.0230 21 1 4.5554 2.4497 0.5982 22 1 5.6326 1.0433 0.4242 23 1 6.4883 -0.1328 -2.3742 24 1 1.7258 -2.9101 1.0200 25 1 0.8783 -2.6235 -0.5187 26 1 2.5682 -3.1827 -0.5242 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107290223.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:04 Heat of formation + Delta-G solvation = 28.898443 kcal Electronic energy + Delta-G solvation = -10799.403445 eV Core-core repulsion = 8878.041845 eV Total energy + Delta-G solvation = -1921.361600 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.02542 -35.80982 -34.14813 -32.19014 -30.14318 -28.95336 -26.20358 -24.86772 -21.44567 -19.75968 -18.48404 -16.95501 -16.25827 -15.79006 -14.85906 -14.34644 -14.27716 -13.69139 -13.47489 -13.46261 -13.27755 -12.87364 -12.77725 -12.54673 -12.25843 -12.23175 -11.78020 -10.99557 -10.75202 -9.40782 -8.66898 -8.57571 -6.52538 1.28037 1.41428 1.52451 1.74328 2.21199 2.30522 2.39639 3.08777 4.09871 4.52954 4.58875 4.64672 4.79248 4.87834 4.92447 5.05385 5.15426 5.24821 5.26114 5.47988 5.66791 5.73999 6.03220 6.40318 6.64789 6.81989 7.19607 7.62102 8.36196 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056274 B = 0.015553 C = 0.013001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.443300 B = 1799.864301 C = 2153.238876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.063 3.937 3 N -0.412 5.412 4 N -0.408 5.408 5 C 0.147 3.853 6 C 0.257 3.743 7 C -0.504 4.504 8 H 0.091 0.909 9 C 0.045 3.955 10 N -0.841 5.841 11 Si 0.984 3.016 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.259 1.259 15 C -0.389 4.389 16 C -0.028 4.028 17 H 0.079 0.921 18 H 0.064 0.936 19 H 0.083 0.917 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.289 0.711 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -1.743 1.983 2.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 N -0.236 5.236 4 N -0.192 5.192 5 C 0.005 3.995 6 C 0.133 3.867 7 C -0.540 4.540 8 H 0.109 0.891 9 C -0.170 4.170 10 N -0.470 5.470 11 Si 0.805 3.195 12 H -0.184 1.184 13 H -0.194 1.194 14 H -0.184 1.184 15 C -0.401 4.401 16 C -0.086 4.086 17 H 0.098 0.902 18 H 0.083 0.917 19 H 0.102 0.898 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.064 -0.176 1.845 1.854 hybrid contribution 0.944 -0.893 -0.177 1.311 sum 0.879 -1.070 1.668 2.167 Atomic orbital electron populations 1.20095 0.85736 1.02774 1.02779 1.22214 0.97414 0.90909 0.99356 1.76703 0.87698 1.24350 1.34891 1.48864 1.03817 1.05246 1.61289 1.21282 0.85056 0.92045 1.01141 1.18947 0.94806 0.82591 0.90321 1.18799 0.97999 1.09795 1.27433 0.89087 1.26669 1.03580 0.94046 0.92734 1.69836 1.34929 1.29973 1.12246 0.85215 0.75663 0.79416 0.79222 1.18412 1.19422 1.18351 1.20463 0.91831 0.96552 1.31262 1.19549 0.99038 0.90601 0.99392 0.90203 0.91698 0.89839 0.92932 0.91467 0.91290 0.90034 0.93990 0.92220 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.99 10.24 71.24 0.73 -1.26 15 2 C 0.06 3.10 7.15 42.76 0.31 3.40 15 3 N -0.41 -22.32 12.54 -47.91 -0.60 -22.92 15 4 N -0.41 -22.47 4.03 -360.74 -1.45 -23.93 15 5 C 0.15 6.98 9.64 127.77 1.23 8.21 15 6 C 0.26 14.43 6.13 39.13 0.24 14.67 15 7 C -0.50 -27.02 8.67 23.23 0.20 -26.82 15 8 H 0.09 4.71 7.90 -2.91 -0.02 4.69 15 9 C 0.04 2.20 4.15 85.32 0.35 2.55 15 10 N -0.84 -43.36 10.92 21.87 0.24 -43.12 15 11 Si 0.98 37.23 29.60 68.60 2.03 39.26 15 12 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 13 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 14 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 15 C -0.39 -20.22 6.21 -19.37 -0.12 -20.34 15 16 C -0.03 -1.19 9.98 71.23 0.71 -0.48 15 17 H 0.08 2.52 8.14 -2.39 -0.02 2.51 15 18 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 19 H 0.08 2.63 7.18 -2.39 -0.02 2.61 15 20 H 0.05 2.53 7.43 -2.38 -0.02 2.52 15 21 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 22 H 0.07 3.20 6.83 -2.39 -0.02 3.19 15 23 H 0.29 13.55 8.30 -92.70 -0.77 12.78 15 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.06 2.18 7.19 -2.39 -0.02 2.16 15 26 H 0.04 1.61 7.98 -2.38 -0.02 1.59 15 Total: -1.00 -63.88 225.96 5.03 -58.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.16 Total: 11.91 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.65 Total: -20.05 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -1.82 Total: -89.97 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -63.88 5.03 -58.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107290223.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.744 kcal (2) G-P(sol) polarization free energy of solvation -63.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds