Wall clock time and date at job start Mon Mar 30 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86797 * 119.99738 * 2 1 4 4 H 1.48500 * 109.46962 * 274.97603 * 3 2 1 5 5 H 1.48490 * 109.47451 * 34.98008 * 3 2 1 6 6 H 1.48505 * 109.47052 * 154.98121 * 3 2 1 7 7 C 1.40336 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99854 * 186.05471 * 7 2 1 9 9 C 1.39793 * 120.00489 * 6.05492 * 7 2 1 10 10 N 1.32817 * 125.80157 * 174.25159 * 9 7 2 11 11 C 1.33055 * 108.68725 * 180.02562 * 10 9 7 12 12 C 1.36075 * 107.88319 * 359.97438 * 11 10 9 13 13 O 1.34456 * 107.42318 * 0.02562 * 12 11 10 14 14 C 1.51088 * 108.69499 * 180.02562 * 12 11 10 15 15 N 1.48122 * 105.57404 * 17.32704 * 14 12 11 16 16 C 1.48111 * 103.51338 * 332.86212 * 15 14 12 17 17 H 0.97003 * 120.00069 * 0.02562 * 1 2 3 18 18 H 1.08993 * 110.22668 * 258.30223 * 14 12 11 19 19 H 1.08995 * 110.22454 * 136.34705 * 14 12 11 20 20 H 1.00904 * 110.99634 * 213.72227 * 15 14 12 21 21 H 1.09004 * 110.21877 * 146.18388 * 16 15 14 22 22 H 1.09000 * 110.22257 * 268.04037 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4943 2.6200 0.8026 6 1 3.5865 1.4121 0.5921 7 6 2.0079 -1.2154 0.0005 8 1 3.0834 -1.2180 0.0992 9 6 1.3148 -2.4227 -0.1266 10 7 1.8651 -3.6254 -0.2478 11 6 0.8947 -4.5304 -0.3457 12 6 -0.2960 -3.8746 -0.2833 13 8 -0.0273 -2.5642 -0.1473 14 6 -1.4126 -4.8867 -0.3922 15 7 -0.7907 -6.1982 -0.0973 16 6 0.6223 -6.0095 -0.4994 17 1 -0.4850 0.8401 -0.0004 18 1 -1.8265 -4.8841 -1.4005 19 1 -2.1926 -4.6671 0.3367 20 1 -1.2246 -6.9333 -0.6355 21 1 1.2797 -6.5836 0.1537 22 1 0.7628 -6.3140 -1.5366 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107705147.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:46 Heat of formation + Delta-G solvation = 8.892718 kcal Electronic energy + Delta-G solvation = -10423.336976 eV Core-core repulsion = 8365.274768 eV Total energy + Delta-G solvation = -2058.062208 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.29462 -38.54225 -35.70188 -34.53402 -30.86298 -29.05378 -27.90325 -23.60389 -21.95891 -21.57240 -19.32304 -17.64616 -17.17125 -16.89628 -15.71337 -15.61606 -15.29244 -14.39967 -14.06933 -13.37191 -13.21475 -13.02744 -12.91408 -12.37434 -11.98878 -11.62967 -11.32998 -10.62627 -10.08047 -9.15118 -8.91591 -6.81042 0.97645 1.36890 1.48050 1.57010 2.09574 2.13606 2.21591 3.08680 3.22229 3.36373 4.27208 4.35842 4.45014 4.57231 4.80929 4.96421 4.99035 5.29325 5.66418 5.83149 6.01675 6.37343 6.44224 6.57163 7.66550 8.13833 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.108640 B = 0.011876 C = 0.010816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.669937 B = 2357.184401 C = 2588.238193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.026 3.974 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.249 1.249 7 C -0.460 4.460 8 H 0.117 0.883 9 C 0.316 3.684 10 N -0.627 5.627 11 C -0.036 4.036 12 C -0.264 4.264 13 O -0.192 6.192 14 C 0.171 3.829 15 N -0.644 5.644 16 C 0.137 3.863 17 H 0.300 0.700 18 H 0.073 0.927 19 H 0.088 0.912 20 H 0.371 0.629 21 H 0.095 0.905 22 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 -2.836 -1.972 4.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.193 4.193 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.182 1.182 6 H -0.172 1.172 7 C -0.495 4.495 8 H 0.135 0.865 9 C 0.133 3.867 10 N -0.361 5.361 11 C -0.162 4.162 12 C -0.321 4.321 13 O -0.084 6.084 14 C 0.042 3.958 15 N -0.278 5.278 16 C 0.008 3.992 17 H 0.111 0.889 18 H 0.090 0.910 19 H 0.107 0.893 20 H 0.190 0.810 21 H 0.113 0.887 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.694 -2.778 -1.230 3.478 hybrid contribution -0.501 0.851 -0.903 1.338 sum -2.194 -1.926 -2.133 3.616 Atomic orbital electron populations 1.69775 1.09638 1.32208 1.32124 1.27333 0.95927 1.05686 0.90342 0.84625 0.78716 0.72905 0.79988 1.17923 1.18183 1.17230 1.18894 0.95792 0.86603 1.48162 0.86504 1.22980 0.76250 0.94272 0.93193 1.70191 1.32555 0.98451 1.34929 1.23063 0.90484 0.98851 1.03807 1.24297 1.01614 0.83755 1.22407 1.84507 1.27022 1.23794 1.73085 1.20379 0.90747 0.83713 1.00970 1.63658 1.01628 1.04571 1.57963 1.20601 0.91374 0.86455 1.00771 0.88860 0.90957 0.89342 0.81011 0.88660 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.03 12.00 21.89 0.26 -43.76 14 2 C 0.03 1.36 5.49 85.38 0.47 1.83 14 3 Si 1.02 37.37 29.57 68.60 2.03 39.40 14 4 H -0.26 -8.85 7.11 99.48 0.71 -8.15 14 5 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 6 H -0.25 -8.75 7.11 99.48 0.71 -8.04 14 7 C -0.46 -26.56 9.45 23.16 0.22 -26.35 14 8 H 0.12 6.39 7.86 -2.91 -0.02 6.37 14 9 C 0.32 19.77 7.65 84.92 0.65 20.42 14 10 N -0.63 -37.91 11.34 -296.80 -3.37 -41.28 14 11 C -0.04 -1.91 8.12 42.02 0.34 -1.57 14 12 C -0.26 -14.07 8.42 25.31 0.21 -13.85 14 13 O -0.19 -11.94 9.08 -10.68 -0.10 -12.04 14 14 C 0.17 6.39 7.46 85.44 0.64 7.02 14 15 N -0.64 -20.32 7.75 -514.54 -3.99 -24.31 14 16 C 0.14 5.06 7.46 85.48 0.64 5.70 14 17 H 0.30 14.26 8.29 -92.71 -0.77 13.49 14 18 H 0.07 2.31 8.14 -2.39 -0.02 2.29 14 19 H 0.09 3.13 8.14 -2.39 -0.02 3.11 14 20 H 0.37 8.01 8.92 -89.69 -0.80 7.21 14 21 H 0.10 3.29 8.14 -2.38 -0.02 3.27 14 22 H 0.08 2.47 8.14 -2.39 -0.02 2.45 14 Total: -1.00 -73.28 202.76 -1.54 -74.82 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.45 Total: 13.97 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 3.17 Total: -6.80 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -7.09 Total: -109.35 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.10 Total: -12.04 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -73.28 -1.54 -74.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107705147.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.708 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds