Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46950 * 2 1 4 4 C 1.50700 * 109.47215 * 120.00047 * 2 1 3 5 5 C 1.40132 * 126.00571 * 300.00001 * 4 2 1 6 6 N 1.30939 * 108.40012 * 179.74107 * 5 4 2 7 7 N 1.40098 * 108.26658 * 0.40648 * 6 5 4 8 8 C 1.37395 * 126.11999 * 179.85540 * 7 6 5 9 9 H 1.08002 * 119.99706 * 179.68520 * 8 7 6 10 10 C 1.38990 * 120.00047 * 359.96643 * 8 7 6 11 11 N 1.31294 * 119.99879 * 359.72348 * 10 8 7 12 12 Si 1.86801 * 120.00042 * 179.72385 * 10 8 7 13 13 H 1.48504 * 109.46920 * 59.99986 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47038 * 299.99755 * 12 10 8 16 16 C 1.35236 * 126.00640 * 120.00026 * 4 2 1 17 17 H 1.09009 * 109.47238 * 59.99968 * 1 2 3 18 18 H 1.09003 * 109.47473 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47264 * 300.00182 * 1 2 3 20 20 H 1.09005 * 109.47014 * 240.00287 * 2 1 3 21 21 H 1.09000 * 109.46792 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47151 * 300.00033 * 3 2 1 23 23 H 1.08996 * 109.46963 * 60.00420 * 3 2 1 24 24 H 1.08003 * 125.80055 * 0.02562 * 5 4 2 25 25 H 0.96995 * 119.99901 * 180.02562 * 11 10 8 26 26 H 1.07994 * 126.21078 * 0.02562 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7725 -0.3430 2.5576 6 7 2.3707 -1.1986 3.3479 7 7 3.0411 -2.1369 2.5523 8 6 3.7895 -3.1961 3.0059 9 1 4.2617 -3.8646 2.3013 10 6 3.9341 -3.4106 4.3715 11 7 3.3599 -2.5979 5.2281 12 14 4.9453 -4.8551 4.9882 13 1 6.3404 -4.7290 4.4951 14 1 4.9444 -4.8619 6.4732 15 1 4.3555 -6.1222 4.4865 16 6 2.8130 -1.8145 1.2479 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 1.8933 -0.5138 -0.8901 21 1 3.1299 1.4425 -0.0005 22 1 1.6766 1.9564 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.1761 0.4997 2.8746 25 1 3.4612 -2.7474 6.1811 26 1 3.1882 -2.3443 0.3849 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108281953.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = 60.391114 kcal Electronic energy + Delta-G solvation = -10512.626125 eV Core-core repulsion = 8592.630150 eV Total energy + Delta-G solvation = -1919.995975 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.41696 -34.86618 -33.08238 -30.10641 -27.80493 -26.50707 -24.82183 -21.17457 -20.34824 -18.59063 -16.76817 -15.39200 -14.48277 -13.88660 -13.30885 -13.23895 -12.86621 -12.30704 -11.70440 -11.63535 -11.38557 -11.15514 -10.92738 -10.64262 -10.53063 -10.25258 -10.04477 -9.31007 -8.55229 -7.98934 -7.00603 -6.47854 -4.17905 3.02166 3.08959 3.12076 3.70473 3.89932 4.34187 4.87096 5.10370 5.59782 5.72323 5.94478 6.15432 6.28030 6.37473 6.41863 6.46378 6.59863 6.79541 6.92026 6.95817 7.14713 7.30418 7.71859 7.97249 8.32450 8.78570 9.51647 9.77261 10.49084 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.096781 B = 0.010493 C = 0.010102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.244107 B = 2667.685824 C = 2771.170200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 C -0.136 4.136 4 C -0.266 4.266 5 C -0.044 4.044 6 N -0.264 5.264 7 N -0.155 5.155 8 C -0.330 4.330 9 H 0.113 0.887 10 C 0.047 3.953 11 N -0.778 5.778 12 Si 0.932 3.068 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.268 1.268 16 C -0.056 4.056 17 H 0.039 0.961 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.145 0.855 25 H 0.273 0.727 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 1.510 -5.740 6.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 C -0.193 4.193 4 C -0.281 4.281 5 C -0.219 4.219 6 N -0.094 5.094 7 N 0.078 4.922 8 C -0.462 4.462 9 H 0.131 0.869 10 C -0.169 4.169 11 N -0.406 5.406 12 Si 0.756 3.244 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.192 1.192 16 C -0.205 4.205 17 H 0.058 0.942 18 H 0.068 0.932 19 H 0.069 0.931 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.162 0.838 25 H 0.083 0.917 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.849 1.184 -4.234 4.478 hybrid contribution 0.302 -0.435 -0.532 0.751 sum -0.547 0.749 -4.766 4.856 Atomic orbital electron populations 1.21797 0.96368 1.01020 1.00152 1.19118 0.93926 0.94232 0.95025 1.21797 1.00751 0.96639 1.00154 1.19261 1.12500 1.02331 0.93961 1.23277 1.05425 1.01533 0.91675 1.78139 1.13235 1.01417 1.16611 1.44806 1.28231 1.16929 1.02266 1.19807 1.29240 1.04524 0.92619 0.86944 1.25593 0.96966 0.98473 0.95842 1.70204 1.34724 1.32987 1.02645 0.85946 0.79904 0.80415 0.78151 1.19238 1.20222 1.19242 1.21814 1.08686 1.01854 0.88118 0.94161 0.93236 0.93078 0.92568 0.93233 0.94160 0.93077 0.83769 0.91679 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.08 37.15 0.34 -1.86 15 2 C 0.00 -0.06 3.28 -91.77 -0.30 -0.36 15 3 C -0.14 -2.19 9.08 37.16 0.34 -1.86 15 4 C -0.27 -6.11 4.80 -104.98 -0.50 -6.62 15 5 C -0.04 -1.10 11.45 -17.22 -0.20 -1.29 15 6 N -0.26 -7.71 10.42 30.70 0.32 -7.39 15 7 N -0.16 -4.40 3.74 -11.54 -0.04 -4.45 15 8 C -0.33 -9.10 10.26 -14.78 -0.15 -9.25 15 9 H 0.11 2.80 7.83 -52.49 -0.41 2.39 15 10 C 0.05 1.26 5.50 -17.50 -0.10 1.16 15 11 N -0.78 -22.28 11.82 55.50 0.66 -21.62 15 12 Si 0.93 19.53 29.55 -169.99 -5.02 14.50 15 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 15 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 16 C -0.06 -1.38 11.35 -16.64 -0.19 -1.57 15 17 H 0.04 0.54 8.14 -51.92 -0.42 0.12 15 18 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.05 0.83 8.02 -51.93 -0.42 0.41 15 20 H 0.06 0.96 8.11 -51.93 -0.42 0.54 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.05 0.83 8.02 -51.93 -0.42 0.41 15 24 H 0.14 3.22 8.06 -52.48 -0.42 2.80 15 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 26 H 0.14 3.01 8.06 -52.49 -0.42 2.59 15 LS Contribution 230.62 15.07 3.48 3.48 Total: -1.00 -30.83 230.62 -4.72 -35.54 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.34 Total: 1.58 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.76 Total: -21.64 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.93 Total: -33.46 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.83 -4.72 -35.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108281953.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.932 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds