Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 C 1.53001 * 109.47027 * 270.27259 * 7 6 5 9 9 C 1.50702 * 109.47025 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00059 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00223 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99921 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00301 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46901 * 59.99754 * 13 11 9 15 15 H 1.48501 * 109.47249 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47170 * 300.00140 * 13 11 9 17 17 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 18 18 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 19 19 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 20 20 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 21 21 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 22 22 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 23 23 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 24 24 H 1.08999 * 109.47577 * 300.00557 * 8 7 6 25 25 H 1.08998 * 109.46940 * 60.00867 * 8 7 6 26 26 H 0.97001 * 120.00060 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 6 1.6451 -3.0062 -1.4416 9 6 1.1801 -4.4396 -1.4414 10 1 1.0127 -4.9529 -0.5060 11 6 0.9684 -5.0959 -2.6353 12 7 1.1718 -4.4708 -3.7743 13 14 0.3927 -6.8730 -2.6350 14 1 -0.9138 -6.9699 -1.9357 15 1 0.2416 -7.3446 -4.0350 16 1 1.3931 -7.7174 -1.9340 17 1 -0.3634 -0.0004 -1.0277 18 1 -0.3633 -0.8898 0.5142 19 1 -0.3633 0.8902 0.5135 20 1 1.9613 2.1345 -0.0004 21 1 4.4369 1.2611 0.0003 22 1 2.5363 -3.1404 0.5150 23 1 0.8430 -2.5918 0.5143 24 1 0.9107 -2.3864 -1.9559 25 1 2.6039 -2.9350 -1.9551 26 1 1.0225 -4.9324 -4.6143 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123950041.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = 45.945260 kcal Electronic energy + Delta-G solvation = -10358.444881 eV Core-core repulsion = 8437.822486 eV Total energy + Delta-G solvation = -1920.622395 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.54076 -33.98068 -33.49280 -31.63011 -28.30169 -26.64440 -24.97016 -21.48940 -20.87516 -19.01229 -16.72104 -16.11561 -15.21444 -14.44206 -14.28575 -13.36119 -12.77252 -12.62952 -12.55015 -12.34745 -12.06817 -11.09662 -10.92285 -10.65672 -9.94177 -9.69179 -9.42197 -9.17446 -9.12404 -8.36306 -7.79061 -6.00846 -4.04776 2.53290 3.26109 3.33327 3.38015 3.40236 3.70057 4.44969 4.99680 5.15324 5.28239 5.34771 5.38345 5.66004 5.80235 5.95330 6.34826 6.56139 6.77892 6.87114 7.22817 7.62666 7.68266 7.78789 7.98171 8.36372 8.68683 9.01751 9.59353 11.10308 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.074933 B = 0.009460 C = 0.009175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.575415 B = 2959.035279 C = 3051.135360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.462 5.462 3 C -0.083 4.083 4 C -0.032 4.032 5 N -0.502 5.502 6 C 0.237 3.763 7 C -0.035 4.035 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 H 0.077 0.923 18 H 0.089 0.911 19 H 0.077 0.923 20 H 0.166 0.834 21 H 0.163 0.837 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.013 0.987 25 H 0.024 0.976 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 8.683 6.790 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.145 5.145 3 C -0.215 4.215 4 C -0.181 4.181 5 N -0.220 5.220 6 C -0.026 4.026 7 C -0.074 4.074 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 H 0.096 0.904 18 H 0.108 0.892 19 H 0.096 0.904 20 H 0.184 0.816 21 H 0.180 0.820 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.954 8.170 6.593 10.679 hybrid contribution -1.042 -0.186 -0.213 1.079 sum -2.996 7.984 6.380 10.650 Atomic orbital electron populations 1.21992 0.77090 1.03960 1.03821 1.45336 1.07468 1.06743 1.54963 1.22503 0.91620 0.92269 1.15096 1.22224 0.96028 0.91707 1.08105 1.70295 1.19020 1.11381 1.21352 1.24025 0.85306 0.91774 1.01450 1.20373 0.99905 0.84317 1.02781 1.19042 0.97693 0.95635 0.88219 1.21157 1.45503 0.97107 0.92469 0.92436 1.25017 0.95512 0.98202 0.95583 1.69967 1.48922 1.37037 0.97327 0.86620 0.79238 0.84951 0.76962 1.20240 1.21299 1.20100 0.90423 0.89243 0.90388 0.81642 0.81998 0.89912 0.91772 0.96893 0.95716 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.97 59.85 0.66 1.62 15 2 N -0.46 -7.98 3.15 -121.27 -0.38 -8.36 15 3 C -0.08 -1.29 11.58 -16.56 -0.19 -1.49 15 4 C -0.03 -0.57 11.87 -17.81 -0.21 -0.78 15 5 N -0.50 -10.87 11.25 -10.81 -0.12 -10.99 15 6 C 0.24 4.92 7.16 -155.42 -1.11 3.81 15 7 C -0.03 -0.75 5.46 -27.88 -0.15 -0.90 15 8 C 0.03 0.85 4.96 -27.88 -0.14 0.71 15 9 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 15 10 H 0.06 1.54 7.74 -52.48 -0.41 1.13 15 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -27.07 13.29 55.43 0.74 -26.34 15 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 15 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 17 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 18 H 0.09 1.12 7.05 -51.93 -0.37 0.75 15 19 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.17 1.89 8.06 -52.49 -0.42 1.47 15 21 H 0.16 2.31 8.06 -52.49 -0.42 1.89 15 22 H 0.08 1.79 8.14 -51.93 -0.42 1.37 15 23 H 0.06 1.24 7.07 -51.93 -0.37 0.87 15 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 15 25 H 0.02 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 LS Contribution 232.10 15.07 3.50 3.50 Total: -1.00 -33.00 232.10 -6.08 -39.09 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -3.23 Total: -2.89 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.56 Total: -10.51 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.23 Total: -45.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.00 -6.08 -39.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123950041.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.031 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds