Wall clock time and date at job start Mon Mar 30 2020 01:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31209 * 1 3 3 Si 1.86799 * 119.99764 * 2 1 4 4 H 1.48505 * 109.46991 * 269.99671 * 3 2 1 5 5 H 1.48498 * 109.47196 * 29.99532 * 3 2 1 6 6 H 1.48502 * 109.47090 * 149.99700 * 3 2 1 7 7 C 1.39129 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00307 * 198.28470 * 7 2 1 9 9 N 1.36867 * 120.00000 * 18.29012 * 7 2 1 10 10 C 1.35879 * 118.98890 * 29.46312 * 9 7 2 11 11 C 1.35010 * 121.40644 * 179.70198 * 10 9 7 12 12 C 1.41560 * 119.30265 * 0.02562 * 11 10 9 13 13 O 1.22238 * 120.91984 * 180.02562 * 12 11 10 14 14 C 1.46649 * 118.16917 * 359.97438 * 12 11 10 15 15 N 1.40048 * 120.70034 * 180.02562 * 14 12 11 16 16 C 1.35635 * 118.60010 * 359.97438 * 14 12 11 17 17 H 0.97000 * 120.00067 * 0.02562 * 1 2 3 18 18 H 1.08002 * 119.29871 * 359.71518 * 10 9 7 19 19 H 1.08002 * 120.35204 * 180.02562 * 11 10 9 20 20 H 0.97005 * 120.00027 * 0.02562 * 15 14 12 21 21 H 0.97002 * 120.00142 * 180.02562 * 15 14 12 22 22 H 1.08002 * 119.75379 * 180.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2460 1.6178 0.0000 4 1 2.4936 2.0464 -1.4001 5 1 1.4434 2.6527 0.6999 6 1 3.5436 1.4403 0.7001 7 6 2.0078 -1.2049 0.0005 8 1 3.0469 -1.2284 0.2940 9 7 1.3753 -2.3604 -0.3709 10 6 0.3563 -2.2945 -1.2674 11 6 -0.2973 -3.4042 -1.6724 12 6 0.0866 -4.6633 -1.1516 13 8 -0.4845 -5.6870 -1.4981 14 6 1.1893 -4.7060 -0.1858 15 7 1.6130 -5.9230 0.3625 16 6 1.7910 -3.5419 0.1645 17 1 -0.4850 0.8400 -0.0004 18 1 0.0631 -1.3339 -1.6646 19 1 -1.1047 -3.3322 -2.3861 20 1 1.1762 -6.7497 0.1039 21 1 2.3432 -5.9394 1.0008 22 1 2.6053 -3.5518 0.8739 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133150217.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:36 Heat of formation + Delta-G solvation = -27.146860 kcal Electronic energy + Delta-G solvation = -10375.949922 eV Core-core repulsion = 8316.324921 eV Total energy + Delta-G solvation = -2059.625001 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.31241 -38.55073 -35.77114 -34.54128 -32.34157 -29.74486 -26.87712 -23.79658 -23.50294 -20.40449 -18.57173 -17.48139 -17.27978 -16.66861 -15.86034 -15.61383 -15.46980 -14.69748 -14.15879 -13.85024 -13.50729 -13.08198 -12.77086 -12.45791 -12.06341 -11.84406 -10.97930 -10.03100 -9.54280 -8.71740 -8.07427 -6.30168 0.83979 0.86710 1.46463 1.54376 1.61325 2.13274 2.66027 2.78251 3.29750 3.35769 3.93352 4.52638 4.60569 4.86436 5.11619 5.25987 5.40917 5.67966 5.83752 6.43682 6.67419 7.01752 7.10016 7.26138 7.57061 8.32463 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.077929 B = 0.012908 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.213066 B = 2168.679703 C = 2441.977880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.015 3.985 3 Si 1.012 2.988 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.396 4.396 8 H 0.130 0.870 9 N -0.262 5.262 10 C 0.149 3.851 11 C -0.371 4.371 12 C 0.333 3.667 13 O -0.640 6.640 14 C 0.020 3.980 15 N -0.859 5.859 16 C -0.011 4.011 17 H 0.292 0.708 18 H 0.154 0.846 19 H 0.125 0.875 20 H 0.398 0.602 21 H 0.404 0.596 22 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 2.917 2.135 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.194 4.194 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.523 4.523 8 H 0.148 0.852 9 N 0.071 4.929 10 C 0.007 3.993 11 C -0.398 4.398 12 C 0.238 3.762 13 O -0.541 6.541 14 C -0.087 4.087 15 N -0.405 5.405 16 C -0.146 4.146 17 H 0.103 0.897 18 H 0.171 0.829 19 H 0.143 0.857 20 H 0.227 0.773 21 H 0.234 0.766 22 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.094 2.763 2.073 7.005 hybrid contribution -0.036 0.320 0.172 0.365 sum 6.058 3.083 2.245 7.158 Atomic orbital electron populations 1.69914 1.08281 1.31143 1.40597 1.26606 0.96109 1.04127 0.92584 0.84648 0.78375 0.74450 0.79301 1.18929 1.20277 1.17473 1.20614 0.97982 0.83463 1.50240 0.85249 1.39236 1.22352 1.06257 1.25033 1.21649 0.89225 0.99515 0.88934 1.21537 1.10674 0.92941 1.14611 1.18438 0.84527 0.89564 0.83721 1.90567 1.59734 1.38072 1.65709 1.19894 0.99352 0.88099 1.01315 1.41544 1.42377 1.04457 1.52111 1.21255 1.04973 0.84189 1.04183 0.89725 0.82886 0.85666 0.77345 0.76580 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.07 11.22 21.68 0.24 -40.82 14 2 C 0.01 0.64 4.93 85.00 0.42 1.06 14 3 Si 1.01 33.26 29.59 68.60 2.03 35.29 14 4 H -0.26 -8.55 7.11 99.48 0.71 -7.84 14 5 H -0.28 -9.11 7.11 99.48 0.71 -8.41 14 6 H -0.25 -7.74 7.11 99.48 0.71 -7.03 14 7 C -0.40 -17.73 9.40 84.12 0.79 -16.93 14 8 H 0.13 5.21 7.90 -2.91 -0.02 5.18 14 9 N -0.26 -12.31 2.77 -350.92 -0.97 -13.28 14 10 C 0.15 7.32 9.00 83.32 0.75 8.07 14 11 C -0.37 -18.84 10.01 22.35 0.22 -18.61 14 12 C 0.33 17.62 6.96 25.29 0.18 17.79 14 13 O -0.64 -36.99 17.45 -6.10 -0.11 -37.10 14 14 C 0.02 0.89 6.95 39.42 0.27 1.16 14 15 N -0.86 -30.76 9.11 -47.96 -0.44 -31.20 14 16 C -0.01 -0.48 10.11 83.41 0.84 0.36 14 17 H 0.29 12.68 8.30 -92.71 -0.77 11.91 14 18 H 0.15 7.45 6.15 -2.91 -0.02 7.44 14 19 H 0.13 6.09 8.06 -2.91 -0.02 6.07 14 20 H 0.40 14.33 8.47 -92.70 -0.79 13.54 14 21 H 0.40 11.16 8.85 -92.71 -0.82 10.34 14 22 H 0.17 5.95 8.04 -2.91 -0.02 5.93 14 Total: -1.00 -60.97 204.58 3.89 -57.08 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.34 Total: 37.14 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 3.48 Total: -7.11 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.16 Total: -85.30 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.11 Total: -37.10 kcal Atomic # 14 Polarization: 33.26 SS G_CDS: 2.03 Total: 35.29 kcal Total: -60.97 3.89 -57.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133150217.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.930 kcal (2) G-P(sol) polarization free energy of solvation -60.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds