Wall clock time and date at job start Mon Mar 30 2020 01:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86807 * 119.99861 * 2 1 4 4 H 1.48493 * 109.47096 * 239.99711 * 3 2 1 5 5 H 1.48498 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46887 * 119.99505 * 3 2 1 7 7 C 1.39949 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99624 * 197.84954 * 7 2 1 9 9 C 1.41391 * 119.99985 * 17.85095 * 7 2 1 10 10 C 1.40711 * 120.24386 * 204.38496 * 9 7 2 11 11 C 1.37623 * 119.74529 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24906 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.75042 * 179.97438 * 12 11 10 14 14 F 1.39898 * 109.47126 * 90.00147 * 13 12 11 15 15 C 1.38638 * 120.49874 * 0.25574 * 12 11 10 16 16 C 1.37615 * 120.24703 * 359.44340 * 15 12 11 17 17 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 18 18 H 1.08004 * 120.13052 * 359.97438 * 10 9 7 19 19 H 1.07996 * 119.87156 * 179.97438 * 11 10 9 20 20 H 1.09003 * 109.47399 * 330.00341 * 13 12 11 21 21 H 1.08999 * 109.47230 * 210.00121 * 13 12 11 22 22 H 1.07996 * 119.87613 * 179.70374 * 15 12 11 23 23 H 1.08006 * 120.12574 * 180.28369 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2124 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6965 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8259 -3.6498 0.0855 11 6 1.1799 -4.8068 -0.2861 12 6 0.0668 -4.7512 -1.1106 13 6 -0.6315 -6.0251 -1.5111 14 9 -1.6277 -6.3247 -0.5756 15 6 -0.4052 -3.5329 -1.5743 16 6 0.2212 -2.3629 -1.2105 17 1 -0.4850 0.8400 -0.0004 18 1 2.6936 -3.6955 0.7270 19 1 1.5420 -5.7616 0.0653 20 1 0.0913 -6.8403 -1.5457 21 1 -1.0833 -5.8980 -2.4948 22 1 -1.2703 -3.5017 -2.2200 23 1 -0.1509 -1.4145 -1.5692 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142530079.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:47 Heat of formation + Delta-G solvation = -48.547427 kcal Electronic energy + Delta-G solvation = -10052.448217 eV Core-core repulsion = 7971.975256 eV Total energy + Delta-G solvation = -2080.472961 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.065 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.83890 -37.51007 -33.88534 -30.73838 -29.34230 -27.00686 -23.66546 -21.08096 -20.06933 -17.36492 -15.55150 -15.18225 -15.06311 -14.87995 -13.95884 -13.14024 -12.91409 -12.21757 -11.98008 -11.52398 -11.18360 -11.00821 -10.71174 -10.33020 -10.30920 -9.58232 -9.43059 -9.19918 -7.54352 -7.43469 -6.82932 -4.43574 2.68352 3.01641 3.03614 3.05404 3.14948 3.87995 4.52676 5.53833 5.56122 5.60465 5.79930 6.26862 6.31805 6.47406 6.88484 7.00687 7.20539 7.29413 7.54507 7.75760 7.98472 8.01573 8.22612 8.57015 8.82063 8.90278 10.11406 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.092027 B = 0.010626 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.185942 B = 2634.361300 C = 2812.378047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.270 4.270 13 C 0.126 3.874 14 F -0.230 7.230 15 C -0.081 4.081 16 C -0.169 4.169 17 H 0.283 0.717 18 H 0.094 0.906 19 H 0.089 0.911 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.089 0.911 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -2.394 -2.422 3.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.272 4.272 13 C 0.071 3.929 14 F -0.211 7.211 15 C -0.100 4.100 16 C -0.189 4.189 17 H 0.094 0.906 18 H 0.112 0.888 19 H 0.107 0.893 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.544 -2.235 -2.383 3.312 hybrid contribution 0.263 0.780 0.130 0.833 sum 0.807 -1.455 -2.252 2.800 Atomic orbital electron populations 1.69818 1.07677 1.29554 1.34246 1.25959 0.94741 1.01473 0.92132 0.86332 0.80145 0.80008 0.80057 1.18739 1.20255 1.18911 1.19617 0.98211 0.91265 1.39828 0.90271 1.17675 0.90906 0.92084 0.88027 1.20960 1.04017 0.92787 1.07144 1.20377 0.95087 0.96673 0.96726 1.19377 1.02617 0.93596 1.11578 1.20522 0.87031 0.96011 0.89292 1.92735 1.64544 1.94624 1.69235 1.20531 0.97865 0.92609 0.98978 1.21306 0.99596 0.96685 1.01289 0.90627 0.88774 0.89289 0.92050 0.91983 0.89299 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.40 10.95 55.55 0.61 -19.79 14 2 C 0.08 1.89 5.14 -17.34 -0.09 1.80 14 3 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 14 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 14 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 14 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 14 7 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 14 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 14 9 C 0.12 3.12 5.57 -106.83 -0.60 2.53 14 10 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 14 11 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 14 12 C -0.27 -6.13 5.62 -104.33 -0.59 -6.72 14 13 C 0.13 2.34 7.66 36.00 0.28 2.62 14 14 F -0.23 -4.72 17.34 2.25 0.04 -4.68 14 15 C -0.08 -1.95 9.67 -39.66 -0.38 -2.33 14 16 C -0.17 -4.46 8.70 -38.87 -0.34 -4.80 14 17 H 0.28 6.63 8.30 -40.82 -0.34 6.30 14 18 H 0.09 2.19 8.06 -52.48 -0.42 1.77 14 19 H 0.09 1.79 8.06 -52.49 -0.42 1.37 14 20 H 0.06 0.98 8.08 -51.93 -0.42 0.56 14 21 H 0.06 1.01 8.08 -51.93 -0.42 0.59 14 22 H 0.09 1.91 8.06 -52.49 -0.42 1.49 14 23 H 0.12 3.21 6.16 -52.48 -0.32 2.88 14 LS Contribution 212.79 15.07 3.21 3.21 Total: -1.00 -27.72 212.79 -5.98 -33.70 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -1.98 Total: 1.71 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -2.82 Total: -27.56 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.61 Total: -19.79 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.04 Total: -4.68 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -27.72 -5.98 -33.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142530079.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.851 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds