Wall clock time and date at job start Mon Mar 30 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.54148 * 2 1 4 4 C 1.53537 * 109.62207 * 239.76508 * 2 1 3 5 5 C 1.51483 * 107.29361 * 302.05258 * 4 2 1 6 6 O 1.21333 * 121.12569 * 138.04826 * 5 4 2 7 7 C 1.46661 * 117.74319 * 318.07506 * 5 4 2 8 8 C 1.32744 * 120.61381 * 11.42164 * 7 5 4 9 9 C 1.49979 * 123.19235 * 359.57191 * 8 7 5 10 10 H 1.08998 * 109.09269 * 261.53953 * 9 8 7 11 11 C 1.50694 * 109.14173 * 142.37292 * 9 8 7 12 12 H 1.08000 * 120.00563 * 238.33157 * 11 9 8 13 13 C 1.37885 * 119.99902 * 58.33321 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08999 * 109.47297 * 299.81801 * 1 2 3 20 20 H 1.08999 * 109.47147 * 59.81989 * 1 2 3 21 21 H 1.09008 * 109.46765 * 179.82196 * 1 2 3 22 22 H 1.09001 * 109.89159 * 61.50094 * 4 2 1 23 23 H 1.09002 * 109.89241 * 182.60402 * 4 2 1 24 24 H 1.08003 * 119.69298 * 191.40141 * 7 5 4 25 25 H 1.07996 * 118.40350 * 179.59012 * 8 7 5 26 26 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0456 -0.7282 -1.2495 5 6 1.4738 -2.1307 -1.2214 6 8 1.0452 -2.6536 -2.2289 7 6 1.4553 -2.8348 0.0651 8 6 1.7117 -2.1861 1.1945 9 6 2.0411 -0.7238 1.2448 10 1 3.1226 -0.6040 1.3090 11 6 1.4033 -0.1154 2.4671 12 1 0.7061 0.7027 2.3619 13 6 1.7098 -0.6031 3.7198 14 7 2.5584 -1.5997 3.8479 15 14 0.9197 0.1516 5.2349 16 1 1.4111 -0.5473 6.4496 17 1 1.2752 1.5912 5.3136 18 1 -0.5559 0.0103 5.1460 19 1 -0.3634 0.5110 0.8916 20 1 -0.3633 0.5166 -0.8884 21 1 -0.3633 -1.0278 -0.0032 22 1 1.7095 -0.2086 -2.1468 23 1 3.1346 -0.7712 -1.2308 24 1 1.2308 -3.8908 0.0938 25 1 1.6818 -2.7382 2.1222 26 1 2.7743 -1.9425 4.7293 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196229580.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:45 Heat of formation + Delta-G solvation = -39.840276 kcal Electronic energy + Delta-G solvation = -10816.142789 eV Core-core repulsion = 8859.507703 eV Total energy + Delta-G solvation = -1956.635086 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.12058 -36.41014 -32.70731 -31.08695 -28.51122 -26.51587 -24.01419 -21.15087 -20.25458 -16.94410 -16.18469 -15.54897 -14.76719 -14.13978 -13.93515 -13.07299 -12.94721 -12.56718 -12.22425 -11.71677 -11.09324 -10.99486 -10.91285 -10.64851 -10.42461 -10.30069 -9.63127 -9.26636 -8.65079 -8.56291 -8.12703 -6.23945 -4.30315 2.11890 3.21321 3.27002 3.29042 3.86312 4.28094 5.01050 5.09067 5.55414 5.71666 5.75558 6.08301 6.19107 6.33225 6.40912 6.52333 6.68465 6.79404 6.98601 7.08441 7.43266 7.51900 7.56640 7.73785 8.12051 8.40088 8.73750 9.35345 10.82913 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.068304 B = 0.013457 C = 0.012353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.831182 B = 2080.201276 C = 2266.084527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 H 0.071 0.929 4 C -0.166 4.166 5 C 0.402 3.598 6 O -0.503 6.503 7 C -0.333 4.333 8 C 0.033 3.967 9 C 0.050 3.950 10 H 0.055 0.945 11 C -0.512 4.512 12 H 0.068 0.932 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.286 1.286 17 H -0.275 1.275 18 H -0.276 1.276 19 H 0.070 0.930 20 H 0.035 0.965 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.130 0.870 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 2.119 -2.834 3.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.204 4.204 5 C 0.285 3.715 6 O -0.383 6.383 7 C -0.352 4.352 8 C 0.014 3.986 9 C 0.032 3.968 10 H 0.073 0.927 11 C -0.550 4.550 12 H 0.086 0.914 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.212 1.212 17 H -0.200 1.200 18 H -0.201 1.201 19 H 0.089 0.911 20 H 0.054 0.946 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.128 0.872 25 H 0.148 0.852 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.908 1.743 -3.195 3.751 hybrid contribution -0.332 0.219 1.073 1.144 sum -1.240 1.962 -2.122 3.145 Atomic orbital electron populations 1.21881 0.95697 1.01610 1.00851 1.21193 0.95873 0.99220 0.93103 0.91034 1.22458 1.01969 0.95625 1.00352 1.22801 0.72680 0.88017 0.87970 1.90427 1.39903 1.70063 1.37906 1.22743 1.17954 1.00435 0.94051 1.24383 0.78915 0.98159 0.97121 1.18022 0.97802 0.88438 0.92542 0.92744 1.21139 1.26645 1.17478 0.89711 0.91405 1.25048 0.94878 0.94989 0.99318 1.69887 1.33550 1.25419 1.24155 0.86563 0.79709 0.79461 0.81834 1.21180 1.20046 1.20107 0.91118 0.94635 0.93212 0.90612 0.89064 0.87232 0.85228 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.42 37.16 0.31 -2.40 15 2 C -0.08 -1.45 2.80 -90.44 -0.25 -1.71 15 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 4 C -0.17 -3.00 5.79 -27.22 -0.16 -3.16 15 5 C 0.40 8.36 5.77 -30.53 -0.18 8.18 15 6 O -0.50 -11.50 17.93 5.51 0.10 -11.40 15 7 C -0.33 -7.03 9.37 -38.06 -0.36 -7.38 15 8 C 0.03 0.75 8.22 -36.53 -0.30 0.45 15 9 C 0.05 1.12 2.10 -93.38 -0.20 0.92 15 10 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 11 C -0.51 -12.59 7.80 -34.44 -0.27 -12.86 15 12 H 0.07 1.63 6.21 -52.49 -0.33 1.30 15 13 C 0.06 1.51 5.23 -17.82 -0.09 1.41 15 14 N -0.89 -23.34 11.45 55.43 0.63 -22.71 15 15 Si 0.90 19.77 29.54 -169.99 -5.02 14.74 15 16 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 19 H 0.07 1.36 6.20 -51.93 -0.32 1.04 15 20 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.05 1.00 6.19 -51.92 -0.32 0.68 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.09 1.52 8.14 -51.93 -0.42 1.09 15 24 H 0.11 2.21 8.06 -52.48 -0.42 1.79 15 25 H 0.13 3.15 6.37 -52.49 -0.33 2.82 15 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 LS Contribution 217.79 15.07 3.28 3.28 Total: -1.00 -26.51 217.79 -5.47 -31.98 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.97 Total: 0.65 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -1.49 Total: -16.54 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.63 Total: -22.71 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.10 Total: -11.40 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -26.51 -5.47 -31.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196229580.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.862 kcal (2) G-P(sol) polarization free energy of solvation -26.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds