Wall clock time and date at job start Mon Mar 30 2020 01:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.62232 * 2 1 4 4 C 1.53547 * 109.54047 * 239.77396 * 2 1 3 5 5 C 1.51489 * 107.35624 * 178.13732 * 4 2 1 6 6 O 1.21323 * 121.13194 * 221.97931 * 5 4 2 7 7 C 1.46834 * 117.63545 * 41.90845 * 5 4 2 8 8 C 1.32746 * 120.65093 * 348.61103 * 7 5 4 9 9 C 1.49979 * 123.18956 * 0.41951 * 8 7 5 10 10 H 1.09004 * 109.13925 * 98.49304 * 9 8 7 11 11 C 1.50706 * 109.13744 * 217.62228 * 9 8 7 12 12 H 1.08002 * 119.99401 * 121.67088 * 11 9 8 13 13 C 1.37870 * 120.00126 * 301.66933 * 11 9 8 14 14 N 1.31521 * 120.00014 * 180.02562 * 13 11 9 15 15 Si 1.86794 * 120.00130 * 359.97438 * 13 11 9 16 16 H 1.48496 * 109.47446 * 90.00248 * 15 13 11 17 17 H 1.48509 * 109.47133 * 209.99886 * 15 13 11 18 18 H 1.48502 * 109.47184 * 330.00014 * 15 13 11 19 19 H 1.09000 * 109.47126 * 180.23018 * 1 2 3 20 20 H 1.09005 * 109.46728 * 300.22837 * 1 2 3 21 21 H 1.09002 * 109.47221 * 60.22359 * 1 2 3 22 22 H 1.09002 * 109.89254 * 297.62143 * 4 2 1 23 23 H 1.09003 * 109.89182 * 58.65256 * 4 2 1 24 24 H 1.08003 * 119.65980 * 168.57546 * 7 5 4 25 25 H 1.08000 * 118.40256 * 180.44398 * 8 7 5 26 26 H 0.96994 * 120.00314 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0436 -0.7285 -1.2503 5 6 3.5567 -0.6589 -1.2243 6 8 4.1914 -0.4289 -2.2323 7 6 4.2265 -0.8782 0.0638 8 6 3.5296 -0.9037 1.1933 9 6 2.0413 -0.7250 1.2440 10 1 1.5658 -1.7038 1.3079 11 6 1.6815 0.0785 2.4671 12 1 1.1437 1.0093 2.3627 13 6 2.0387 -0.3746 3.7192 14 7 1.7243 0.3264 4.7867 15 14 2.9681 -1.9848 3.8998 16 1 4.4288 -1.7215 3.8510 17 1 2.6217 -2.6132 5.2000 18 1 2.5928 -2.8999 2.7921 19 1 -0.3633 -1.0277 0.0041 20 1 -0.3633 0.5174 0.8880 21 1 -0.3634 0.5104 -0.8920 22 1 1.7198 -1.7691 -1.2325 23 1 1.6651 -0.2378 -2.1471 24 1 5.2967 -1.0206 0.0923 25 1 4.0601 -1.0604 2.1209 26 1 1.9759 0.0079 5.6676 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196229594.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:48 Heat of formation + Delta-G solvation = -35.153282 kcal Electronic energy + Delta-G solvation = -10758.403494 eV Core-core repulsion = 8801.971651 eV Total energy + Delta-G solvation = -1956.431842 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.22573 -36.64803 -32.64363 -31.94603 -29.12982 -26.59409 -23.49160 -21.75503 -20.02308 -17.45600 -17.01943 -15.82011 -14.70206 -14.45298 -14.04018 -13.33822 -12.92875 -12.80358 -12.49361 -12.09056 -11.55142 -11.27885 -10.79197 -10.74108 -10.43991 -9.95364 -9.75320 -9.47674 -8.97203 -8.69825 -8.50880 -6.26497 -4.27345 1.71390 3.08326 3.21685 3.24397 3.50153 4.20376 4.73754 5.02017 5.29952 5.49101 5.52494 5.84727 5.96428 6.04729 6.19315 6.25954 6.42296 6.57481 6.71485 6.86274 6.97411 7.07281 7.17802 7.53094 8.09268 8.30910 8.77691 9.32399 10.85842 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.016641 C = 0.013563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.333647 B = 1682.221092 C = 2063.981072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 H 0.071 0.929 4 C -0.166 4.166 5 C 0.398 3.602 6 O -0.489 6.489 7 C -0.293 4.293 8 C -0.021 4.021 9 C 0.021 3.979 10 H 0.055 0.945 11 C -0.511 4.511 12 H 0.084 0.916 13 C 0.071 3.929 14 N -0.890 5.890 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.261 1.261 19 H 0.049 0.951 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 -3.745 -6.221 7.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 H 0.089 0.911 4 C -0.204 4.204 5 C 0.280 3.720 6 O -0.367 6.367 7 C -0.312 4.312 8 C -0.039 4.039 9 C 0.003 3.997 10 H 0.073 0.927 11 C -0.549 4.549 12 H 0.102 0.898 13 C -0.132 4.132 14 N -0.527 5.527 15 Si 0.701 3.299 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.185 1.185 19 H 0.068 0.932 20 H 0.090 0.910 21 H 0.059 0.941 22 H 0.112 0.888 23 H 0.100 0.900 24 H 0.135 0.865 25 H 0.124 0.876 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.185 -3.611 -6.524 7.459 hybrid contribution 0.725 -0.828 0.541 1.227 sum 0.910 -4.439 -5.983 7.506 Atomic orbital electron populations 1.21711 0.94638 1.01421 1.01411 1.21059 0.96234 0.99369 0.91854 0.91084 1.22514 0.94101 1.03040 1.00752 1.22877 0.91412 0.70040 0.87650 1.90456 1.70308 1.38509 1.37476 1.22859 1.00318 1.14023 0.94035 1.24581 0.99477 0.83291 0.96591 1.18502 0.87814 0.97936 0.95444 0.92729 1.20940 1.37230 1.08714 0.87996 0.89839 1.25062 0.95522 0.96692 0.95959 1.69869 1.46146 1.38304 0.98393 0.87110 0.80080 0.84730 0.77987 1.20290 1.21560 1.18524 0.93234 0.90975 0.94083 0.88802 0.90015 0.86503 0.87635 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.02 37.16 0.34 -1.89 15 2 C -0.07 -1.23 2.14 -90.44 -0.19 -1.42 15 3 H 0.07 1.38 8.13 -51.93 -0.42 0.96 15 4 C -0.17 -2.76 5.50 -27.21 -0.15 -2.91 15 5 C 0.40 7.61 6.94 -30.45 -0.21 7.40 15 6 O -0.49 -10.35 17.93 5.52 0.10 -10.25 15 7 C -0.29 -5.66 10.05 -37.98 -0.38 -6.04 15 8 C -0.02 -0.43 7.89 -36.53 -0.29 -0.72 15 9 C 0.02 0.45 1.41 -93.38 -0.13 0.32 15 10 H 0.06 1.17 7.23 -51.93 -0.38 0.79 15 11 C -0.51 -13.05 8.43 -34.44 -0.29 -13.34 15 12 H 0.08 2.31 7.40 -52.49 -0.39 1.92 15 13 C 0.07 1.88 5.44 -17.82 -0.10 1.78 15 14 N -0.89 -25.53 13.96 55.43 0.77 -24.76 15 15 Si 0.87 19.91 24.42 -169.99 -4.15 15.76 15 16 H -0.28 -6.13 6.71 56.52 0.38 -5.75 15 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 18 H -0.26 -5.62 6.51 56.52 0.37 -5.25 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 1.32 7.07 -51.93 -0.37 0.95 15 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.12 2.09 8.06 -52.48 -0.42 1.67 15 25 H 0.11 2.27 4.14 -52.49 -0.22 2.05 15 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 216.36 15.07 3.26 3.26 Total: -1.00 -28.09 216.36 -4.50 -32.59 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.08 Total: 0.22 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.41 Total: -16.81 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.77 Total: -24.76 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.10 Total: -10.25 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.15 Total: 15.76 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.09 -4.50 -32.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196229594.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.565 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds