Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.34509 * 125.79251 * 90.00216 * 12 11 10 14 14 C 1.41382 * 106.84493 * 180.02562 * 13 12 11 15 15 C 1.34525 * 106.83881 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.41856 * 359.73761 * 15 14 13 17 17 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 19 19 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 20 20 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 21 21 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 22 22 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 23 23 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 24 24 H 1.08003 * 126.57870 * 359.96205 * 13 12 11 25 25 H 1.07996 * 126.58216 * 179.97438 * 14 13 12 26 26 H 1.07999 * 125.79058 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4598 -6.1325 -0.0005 13 6 2.9702 -6.7305 1.0908 14 6 3.8400 -7.7464 0.6323 15 6 3.8095 -7.7080 -0.7120 16 8 2.9677 -6.7322 -1.0897 17 1 -0.4851 0.8400 0.0004 18 1 0.6242 -2.5567 -0.8904 19 1 0.6248 -2.5571 0.8896 20 1 2.8721 -3.6042 -0.8905 21 1 2.8721 -3.6043 0.8895 22 1 0.8535 -5.0450 0.8885 23 1 0.8542 -5.0446 -0.8914 24 1 2.7573 -6.4816 2.1200 25 1 4.4186 -8.4228 1.2439 26 1 4.3646 -8.3550 -1.3751 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000197169891.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = -28.399447 kcal Electronic energy + Delta-G solvation = -10055.402545 eV Core-core repulsion = 8099.263571 eV Total energy + Delta-G solvation = -1956.138974 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.41734 -36.63038 -34.54337 -33.70246 -31.16987 -28.12962 -25.27474 -22.60740 -22.25429 -21.19474 -18.63042 -17.94958 -16.89734 -16.50544 -15.97329 -15.32774 -14.40874 -13.99764 -13.69132 -13.62726 -13.50598 -12.96452 -12.60661 -12.55574 -12.38730 -11.54321 -11.40275 -11.24664 -10.78712 -10.54690 -9.28930 -8.19841 -6.31123 0.86919 1.40361 1.43432 1.51459 1.76246 2.19372 2.41845 3.13063 3.86003 4.14497 4.20102 4.35175 4.41500 4.64033 4.85373 4.98390 5.09912 5.13233 5.16455 5.31467 5.50919 5.67208 5.73874 5.84866 6.24944 6.29369 6.84787 7.37888 8.91642 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.093426 B = 0.007406 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.629795 B = 3779.663599 C = 3880.858739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.091 4.091 11 C -0.036 4.036 12 C -0.021 4.021 13 C -0.227 4.227 14 C -0.223 4.223 15 C -0.052 4.052 16 O -0.198 6.198 17 H 0.264 0.736 18 H -0.005 1.005 19 H 0.000 1.000 20 H 0.044 0.956 21 H 0.053 0.947 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.173 0.827 26 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 -12.911 0.466 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.129 4.129 11 C -0.073 4.073 12 C -0.071 4.071 13 C -0.246 4.246 14 C -0.242 4.242 15 C -0.119 4.119 16 O -0.095 6.095 17 H 0.073 0.927 18 H 0.014 0.986 19 H 0.019 0.981 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.118 0.882 23 H 0.093 0.907 24 H 0.173 0.827 25 H 0.190 0.810 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 6.355 -12.721 0.175 14.222 hybrid contribution 0.188 0.863 0.176 0.901 sum 6.543 -11.858 0.351 13.548 Atomic orbital electron populations 1.70075 1.07721 1.27907 1.51505 1.25962 0.95798 1.03294 0.94642 0.85507 0.78305 0.78114 0.79160 1.19309 1.20644 1.19154 1.21664 0.93488 0.92527 1.50861 0.92474 1.19029 0.94357 0.92629 0.95383 1.21430 0.98113 0.92739 1.00577 1.20183 0.94458 0.88561 1.04135 1.22745 1.01311 0.98380 0.84631 1.21900 1.02794 1.00182 0.99772 1.22175 1.04087 1.02580 0.95353 1.24839 0.96616 0.93393 0.97009 1.84018 1.48921 1.40793 1.35804 0.92678 0.98617 0.98141 0.93743 0.92790 0.88233 0.90664 0.82705 0.80959 0.74463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 15 2 C 0.00 0.05 5.46 84.65 0.46 0.52 15 3 Si 0.96 44.73 29.54 68.60 2.03 46.75 15 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.55 -31.84 9.11 25.60 0.23 -31.61 15 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 15 9 C 0.02 1.23 4.97 29.85 0.15 1.38 15 10 C -0.09 -3.90 5.14 30.60 0.16 -3.74 15 11 C -0.04 -1.29 5.75 29.85 0.17 -1.11 15 12 C -0.02 -0.69 6.57 24.83 0.16 -0.53 15 13 C -0.23 -6.62 10.81 22.19 0.24 -6.38 15 14 C -0.22 -5.34 10.91 22.19 0.24 -5.10 15 15 C -0.05 -1.22 12.09 66.97 0.81 -0.41 15 16 O -0.20 -6.30 10.65 -2.55 -0.03 -6.33 15 17 H 0.26 15.20 8.31 -92.71 -0.77 14.43 15 18 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 19 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 20 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.05 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.10 3.27 8.14 -2.39 -0.02 3.25 15 23 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.16 4.05 8.06 -2.91 -0.02 4.03 15 25 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15 26 H 0.24 3.17 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -66.33 234.68 6.05 -60.28 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.14 Total: 3.11 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 2.63 Total: -46.99 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.03 Total: -6.33 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.33 6.05 -60.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197169891.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.879 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds