Wall clock time and date at job start Mon Mar 30 2020 01:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35471 * 116.99971 * 2 1 4 4 C 1.39818 * 119.86625 * 180.02562 * 3 2 1 5 5 N 1.31497 * 120.15911 * 180.02562 * 4 3 2 6 6 C 1.34039 * 119.88641 * 359.97438 * 5 4 3 7 7 C 1.41162 * 120.14132 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00641 * 180.02562 * 7 6 5 9 9 C 1.40014 * 119.99601 * 359.71687 * 7 6 5 10 10 N 1.30774 * 120.00135 * 0.28286 * 9 7 6 11 11 Si 1.86803 * 119.99987 * 180.27726 * 9 7 6 12 12 H 1.48499 * 109.46996 * 60.00830 * 11 9 7 13 13 H 1.48504 * 109.47036 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00626 * 11 9 7 15 15 C 1.40791 * 119.72898 * 0.27264 * 6 5 4 16 16 N 1.31780 * 119.83613 * 359.44076 * 15 6 5 17 17 H 1.09003 * 109.47210 * 179.97438 * 1 2 3 18 18 H 1.09004 * 109.47387 * 300.00146 * 1 2 3 19 19 H 1.09011 * 109.47150 * 59.99884 * 1 2 3 20 20 H 1.07997 * 119.91418 * 0.04122 * 4 3 2 21 21 H 0.97005 * 120.00089 * 179.97438 * 10 9 7 22 22 H 1.08000 * 120.08111 * 179.72181 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 6 3.4404 1.2770 -0.0005 5 7 4.0433 2.4456 0.0000 6 6 3.3168 3.5720 0.0005 7 6 3.9585 4.8293 0.0005 8 1 3.3710 5.7356 0.0013 9 6 5.3568 4.9016 0.0059 10 7 6.0683 3.8043 0.0054 11 14 6.2060 6.5654 0.0138 12 1 5.8031 7.3210 1.2270 13 1 7.6781 6.3697 0.0181 14 1 5.8120 7.3280 -1.1980 15 6 1.9110 3.4960 0.0063 16 7 1.3179 2.3193 0.0000 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8901 20 1 4.0251 0.3690 -0.0016 21 1 7.0370 3.8544 0.0088 22 1 1.3201 4.4000 0.0113 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213655638.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:28 Heat of formation + Delta-G solvation = 2.493663 kcal Electronic energy + Delta-G solvation = -10245.019613 eV Core-core repulsion = 8186.679921 eV Total energy + Delta-G solvation = -2058.339692 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.28487 -36.97146 -33.81219 -32.03037 -29.90467 -27.07752 -25.08462 -22.75032 -21.64519 -17.73993 -17.01646 -16.27932 -15.19124 -14.95444 -14.14539 -13.40405 -13.06724 -12.67452 -12.28887 -11.53818 -11.36046 -11.07907 -10.76884 -10.49321 -10.33698 -9.62268 -9.59466 -9.16859 -7.58593 -7.48236 -6.55580 -4.57870 2.49072 2.88990 3.02779 3.04735 3.14686 3.85313 4.29790 4.63107 5.66813 5.68903 5.84644 5.94116 5.97586 6.19810 6.28931 6.85227 6.96170 7.02869 7.29405 7.96802 8.19735 8.49619 8.68600 9.07727 9.75386 10.15622 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.113582 B = 0.011108 C = 0.010174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 246.459198 B = 2520.208070 C = 2751.518523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.324 6.324 3 C 0.094 3.906 4 C 0.085 3.915 5 N -0.426 5.426 6 C 0.186 3.814 7 C -0.418 4.418 8 H 0.090 0.910 9 C 0.065 3.935 10 N -0.717 5.717 11 Si 0.914 3.086 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.263 1.263 15 C -0.037 4.037 16 N -0.477 5.477 17 H 0.077 0.923 18 H 0.043 0.957 19 H 0.043 0.957 20 H 0.138 0.862 21 H 0.278 0.722 22 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -0.274 0.018 2.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.233 6.233 3 C -0.085 4.085 4 C -0.084 4.084 5 N -0.144 5.144 6 C 0.060 3.940 7 C -0.450 4.450 8 H 0.108 0.892 9 C -0.161 4.161 10 N -0.338 5.338 11 Si 0.738 3.262 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.188 1.188 15 C -0.204 4.204 16 N -0.201 5.201 17 H 0.095 0.905 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.156 0.844 21 H 0.089 0.911 22 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.061 -0.627 0.015 2.155 hybrid contribution 0.061 0.824 0.004 0.826 sum -2.000 0.197 0.019 2.010 Atomic orbital electron populations 1.22454 0.80411 1.00629 1.01047 1.86015 1.20239 1.25906 1.91113 1.20447 0.90877 0.84365 1.12858 1.22833 0.88486 0.98082 0.98990 1.69620 1.34699 0.95874 1.14171 1.19355 0.89483 0.93135 0.91994 1.19467 0.91508 0.92000 1.41997 0.89226 1.26122 0.98020 0.98387 0.93572 1.70078 1.07172 1.28635 1.27926 0.86272 0.78239 0.81683 0.80018 1.18783 1.20107 1.18783 1.22917 0.93406 0.93123 1.11001 1.67297 1.40654 0.99002 1.13192 0.90502 0.93857 0.93869 0.84440 0.91116 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 10.38 101.05 1.05 1.95 14 2 O -0.32 -7.13 10.48 -18.10 -0.19 -7.32 14 3 C 0.09 2.33 7.51 -16.53 -0.12 2.21 14 4 C 0.09 2.16 11.18 -17.10 -0.19 1.97 14 5 N -0.43 -11.81 8.02 -10.78 -0.09 -11.89 14 6 C 0.19 5.06 6.55 -84.83 -0.56 4.50 14 7 C -0.42 -10.81 9.15 -37.81 -0.35 -11.15 14 8 H 0.09 2.11 7.85 -52.49 -0.41 1.69 14 9 C 0.06 1.60 5.50 -17.34 -0.10 1.50 14 10 N -0.72 -18.66 11.48 55.55 0.64 -18.03 14 11 Si 0.91 17.93 29.56 -169.99 -5.02 12.91 14 12 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 13 H -0.28 -5.30 7.11 56.52 0.40 -4.90 14 14 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 15 C -0.04 -0.94 10.98 -16.61 -0.18 -1.12 14 16 N -0.48 -11.94 9.35 -12.37 -0.12 -12.05 14 17 H 0.08 1.06 8.14 -51.93 -0.42 0.63 14 18 H 0.04 0.76 8.11 -51.93 -0.42 0.34 14 19 H 0.04 0.76 8.11 -51.92 -0.42 0.34 14 20 H 0.14 3.10 8.06 -52.49 -0.42 2.67 14 21 H 0.28 6.53 8.30 -40.82 -0.34 6.19 14 22 H 0.14 3.06 8.06 -52.49 -0.42 2.63 14 LS Contribution 208.06 15.07 3.14 3.14 Total: -1.00 -29.39 208.06 -3.74 -33.13 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -1.66 Total: 0.25 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.44 Total: -0.14 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.44 Total: -41.97 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.19 Total: -7.32 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -29.39 -3.74 -33.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213655638.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.624 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds