Wall clock time and date at job start Mon Mar 30 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34943 * 120.65356 * 2 1 4 4 H 0.97009 * 119.21633 * 0.02562 * 3 2 1 5 5 C 1.34450 * 121.56192 * 179.70683 * 3 2 1 6 6 N 1.30475 * 122.93608 * 0.58944 * 5 3 2 7 7 C 1.34483 * 121.00327 * 359.70821 * 6 5 3 8 8 O 1.21945 * 120.83373 * 179.97438 * 7 6 5 9 9 C 1.39579 * 120.65259 * 180.27496 * 2 1 3 10 10 C 1.40993 * 121.26362 * 359.97438 * 9 2 1 11 11 H 1.08001 * 120.00338 * 317.41378 * 10 9 2 12 12 C 1.39930 * 120.00099 * 137.41761 * 10 9 2 13 13 N 1.30900 * 119.99988 * 159.54272 * 12 10 9 14 14 Si 1.86801 * 120.00012 * 339.54937 * 12 10 9 15 15 H 1.48492 * 109.47337 * 95.25974 * 14 12 10 16 16 H 1.48506 * 109.46834 * 215.26339 * 14 12 10 17 17 H 1.48496 * 109.46817 * 335.25959 * 14 12 10 18 18 H 1.08999 * 109.46958 * 269.72355 * 1 2 3 19 19 H 1.09005 * 109.46688 * 149.72058 * 1 2 3 20 20 H 1.08999 * 109.46942 * 29.72853 * 1 2 3 21 21 H 1.08003 * 118.53280 * 180.30069 * 5 3 2 22 22 H 0.96997 * 120.00188 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1950 1.1609 0.0000 4 1 1.7081 1.9999 0.0004 5 6 3.5393 1.1822 0.0059 6 7 4.2660 0.0986 0.0006 7 6 3.6945 -1.1188 -0.0053 8 8 4.3767 -2.1295 -0.0106 9 6 2.2186 -1.2007 -0.0058 10 6 1.5549 -2.4447 -0.0112 11 1 0.6934 -2.5999 0.6213 12 6 2.0124 -3.4782 -0.8361 13 7 1.6852 -4.7183 -0.5741 14 14 3.0903 -3.0884 -2.3111 15 1 4.5186 -3.2420 -1.9349 16 1 2.7675 -4.0214 -3.4204 17 1 2.8416 -1.6920 -2.7505 18 1 -0.3633 -0.0050 1.0276 19 1 -0.3633 -0.8875 -0.5182 20 1 -0.3633 0.8924 -0.5096 21 1 4.0401 2.1391 0.0105 22 1 2.0026 -5.4348 -1.1456 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213655984.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:05 Heat of formation + Delta-G solvation = -2.858392 kcal Electronic energy + Delta-G solvation = -10660.271338 eV Core-core repulsion = 8601.699564 eV Total energy + Delta-G solvation = -2058.571774 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.76097 -36.55511 -33.91500 -32.62286 -31.11070 -27.88846 -25.23104 -22.41259 -20.94590 -18.32221 -17.31147 -16.09043 -15.55407 -14.78296 -14.22791 -13.01385 -12.91401 -12.65782 -12.17389 -11.85148 -11.81129 -11.29374 -10.88827 -10.48223 -10.05003 -9.76674 -9.23479 -8.64985 -7.84464 -7.15171 -6.74779 -4.32229 2.24887 2.55731 3.31121 3.41432 3.54269 3.85948 4.28553 4.75074 5.06957 5.35088 5.75404 5.81336 6.09396 6.31477 6.50433 6.79364 7.00047 7.35806 7.58916 8.00464 8.21948 8.54656 8.82292 9.14606 9.47966 10.18256 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.022286 C = 0.017537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.254037 B = 1256.084215 C = 1596.246551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.107 4.107 3 N -0.565 5.565 4 H 0.398 0.602 5 C 0.341 3.659 6 N -0.628 5.628 7 C 0.481 3.519 8 O -0.520 6.520 9 C -0.044 4.044 10 C -0.424 4.424 11 H 0.092 0.908 12 C 0.105 3.895 13 N -0.801 5.801 14 Si 0.913 3.087 15 H -0.243 1.243 16 H -0.295 1.295 17 H -0.267 1.267 18 H 0.046 0.954 19 H 0.080 0.920 20 H 0.040 0.960 21 H 0.178 0.822 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 10.738 -1.469 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.211 4.211 3 N -0.177 5.177 4 H 0.231 0.769 5 C 0.054 3.946 6 N -0.377 5.377 7 C 0.273 3.727 8 O -0.400 6.400 9 C -0.056 4.056 10 C -0.453 4.453 11 H 0.110 0.890 12 C -0.116 4.116 13 N -0.425 5.425 14 Si 0.740 3.260 15 H -0.168 1.168 16 H -0.223 1.223 17 H -0.191 1.191 18 H 0.065 0.935 19 H 0.099 0.901 20 H 0.059 0.941 21 H 0.195 0.805 22 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.649 9.564 -1.487 9.818 hybrid contribution -0.655 0.466 -0.454 0.924 sum -2.304 10.030 -1.942 10.473 Atomic orbital electron populations 1.20215 0.89792 1.01765 1.00566 1.20281 0.93352 0.84061 1.23442 1.41576 1.06900 1.09096 1.60101 0.76874 1.23961 0.80031 0.99042 0.91580 1.69113 1.37346 0.99822 1.31428 1.20033 0.88479 0.86550 0.77625 1.90626 1.66544 1.35377 1.47473 1.20409 0.93043 0.93150 0.98980 1.18814 1.12607 0.92886 1.21041 0.88986 1.25975 0.93076 0.93629 0.98940 1.69725 1.37385 1.00350 1.35005 0.86291 0.82908 0.78753 0.78067 1.16776 1.22305 1.19139 0.93524 0.90090 0.94055 0.80546 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 9.69 36.01 0.35 -0.79 14 2 C -0.11 -2.25 6.95 -80.72 -0.56 -2.81 14 3 N -0.56 -9.21 5.17 -9.73 -0.05 -9.26 14 4 H 0.40 4.36 8.79 -40.82 -0.36 4.00 14 5 C 0.34 5.91 12.25 -90.93 -1.11 4.80 14 6 N -0.63 -15.09 10.46 -14.37 -0.15 -15.24 14 7 C 0.48 13.55 6.54 -12.48 -0.08 13.47 14 8 O -0.52 -16.43 13.66 4.97 0.07 -16.36 14 9 C -0.04 -1.17 4.80 -104.44 -0.50 -1.67 14 10 C -0.42 -11.99 8.15 -37.91 -0.31 -12.29 14 11 H 0.09 2.62 7.88 -52.49 -0.41 2.21 14 12 C 0.10 3.02 5.05 -17.32 -0.09 2.93 14 13 N -0.80 -22.96 13.93 55.55 0.77 -22.19 14 14 Si 0.91 24.21 24.79 -169.99 -4.21 20.00 14 15 H -0.24 -6.95 6.28 56.52 0.35 -6.60 14 16 H -0.30 -7.25 7.11 56.52 0.40 -6.85 14 17 H -0.27 -7.06 7.11 56.52 0.40 -6.66 14 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 14 19 H 0.08 1.55 7.17 -51.93 -0.37 1.18 14 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 14 21 H 0.18 1.96 8.06 -52.48 -0.42 1.53 14 22 H 0.28 7.49 8.30 -40.82 -0.34 7.15 14 LS Contribution 198.43 15.07 2.99 2.99 Total: -1.00 -35.50 198.43 -4.48 -39.99 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: -1.59 Total: -3.55 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.31 Total: 3.63 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.57 Total: -46.69 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.07 Total: -16.36 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.21 Total: 20.00 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -35.50 -4.48 -39.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213655984.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.127 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds