Wall clock time and date at job start Mon Mar 30 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34943 * 120.65356 * 2 1 4 4 H 0.97009 * 119.21633 * 0.02562 * 3 2 1 5 5 C 1.34450 * 121.56192 * 179.70683 * 3 2 1 6 6 N 1.30475 * 122.93608 * 0.58944 * 5 3 2 7 7 C 1.34483 * 121.00327 * 359.70821 * 6 5 3 8 8 O 1.21945 * 120.83373 * 179.97438 * 7 6 5 9 9 C 1.39579 * 120.65259 * 180.27496 * 2 1 3 10 10 C 1.40993 * 121.26362 * 359.97438 * 9 2 1 11 11 H 1.08001 * 120.00338 * 317.41378 * 10 9 2 12 12 C 1.39930 * 120.00099 * 137.41761 * 10 9 2 13 13 N 1.30900 * 119.99988 * 159.54272 * 12 10 9 14 14 Si 1.86801 * 120.00012 * 339.54937 * 12 10 9 15 15 H 1.48492 * 109.47337 * 95.25974 * 14 12 10 16 16 H 1.48506 * 109.46834 * 215.26339 * 14 12 10 17 17 H 1.48496 * 109.46817 * 335.25959 * 14 12 10 18 18 H 1.08999 * 109.46958 * 269.72355 * 1 2 3 19 19 H 1.09005 * 109.46688 * 149.72058 * 1 2 3 20 20 H 1.08999 * 109.46942 * 29.72853 * 1 2 3 21 21 H 1.08003 * 118.53280 * 180.30069 * 5 3 2 22 22 H 0.96997 * 120.00188 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1950 1.1609 0.0000 4 1 1.7081 1.9999 0.0004 5 6 3.5393 1.1822 0.0059 6 7 4.2660 0.0986 0.0006 7 6 3.6945 -1.1188 -0.0053 8 8 4.3767 -2.1295 -0.0106 9 6 2.2186 -1.2007 -0.0058 10 6 1.5549 -2.4447 -0.0112 11 1 0.6934 -2.5999 0.6213 12 6 2.0124 -3.4782 -0.8361 13 7 1.6852 -4.7183 -0.5741 14 14 3.0903 -3.0884 -2.3111 15 1 4.5186 -3.2420 -1.9349 16 1 2.7675 -4.0214 -3.4204 17 1 2.8416 -1.6920 -2.7505 18 1 -0.3633 -0.0050 1.0276 19 1 -0.3633 -0.8875 -0.5182 20 1 -0.3633 0.8924 -0.5096 21 1 4.0401 2.1391 0.0105 22 1 2.0026 -5.4348 -1.1456 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213655984.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:05 Heat of formation + Delta-G solvation = -32.600587 kcal Electronic energy + Delta-G solvation = -10661.561056 eV Core-core repulsion = 8601.699564 eV Total energy + Delta-G solvation = -2059.861493 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.57307 -38.52091 -35.79991 -34.51003 -32.96594 -29.58363 -27.04004 -24.22478 -22.76899 -20.21149 -19.06406 -17.84821 -17.44681 -16.76060 -16.10509 -14.96201 -14.80475 -14.44690 -13.88435 -13.59200 -13.41373 -13.17078 -12.76493 -12.40502 -12.04036 -11.71241 -11.17684 -10.62870 -9.79705 -9.11919 -8.74498 -6.33049 0.56684 0.64833 1.21759 1.28917 1.43081 2.23530 2.34896 2.74797 3.33520 3.62668 4.09406 4.30478 4.70121 4.80846 4.93632 5.11654 5.40277 5.50052 5.74149 6.14550 6.57320 6.63577 6.86966 7.27506 7.60456 8.25551 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.022286 C = 0.017537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.254037 B = 1256.084215 C = 1596.246551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.018 4.018 3 N -0.550 5.550 4 H 0.437 0.563 5 C 0.370 3.630 6 N -0.658 5.658 7 C 0.457 3.543 8 O -0.582 6.582 9 C -0.105 4.105 10 C -0.462 4.462 11 H 0.070 0.930 12 C 0.070 3.930 13 N -0.855 5.855 14 Si 0.953 3.047 15 H -0.285 1.285 16 H -0.273 1.273 17 H -0.267 1.267 18 H 0.071 0.929 19 H 0.062 0.938 20 H 0.097 0.903 21 H 0.258 0.742 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 15.771 -1.632 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.164 5.164 4 H 0.278 0.722 5 C 0.084 3.916 6 N -0.406 5.406 7 C 0.251 3.749 8 O -0.467 6.467 9 C -0.116 4.116 10 C -0.494 4.494 11 H 0.088 0.912 12 C -0.144 4.144 13 N -0.483 5.483 14 Si 0.780 3.220 15 H -0.212 1.212 16 H -0.199 1.199 17 H -0.191 1.191 18 H 0.089 0.911 19 H 0.081 0.919 20 H 0.116 0.884 21 H 0.274 0.726 22 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.760 14.698 -1.671 15.048 hybrid contribution -0.346 -0.422 -0.296 0.621 sum -3.106 14.276 -1.966 14.742 Atomic orbital electron populations 1.20463 0.86469 1.03755 1.02642 1.21014 0.95524 0.84069 1.11940 1.41738 1.07188 1.09437 1.58084 0.72227 1.25407 0.80155 0.99877 0.86118 1.69065 1.39321 1.00069 1.32125 1.20476 0.89270 0.87292 0.77838 1.90575 1.67557 1.37489 1.51096 1.20442 0.92702 0.94609 1.03856 1.18636 1.13358 0.94634 1.22784 0.91211 1.26338 0.94000 0.93919 1.00180 1.69760 1.41159 1.00680 1.36740 0.85705 0.79704 0.78808 0.77770 1.21154 1.19936 1.19134 0.91088 0.91889 0.88398 0.72644 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.20 9.69 71.24 0.69 -1.51 14 2 C -0.02 -0.65 6.95 42.41 0.29 -0.36 14 3 N -0.55 -13.74 5.17 -184.70 -0.96 -14.69 14 4 H 0.44 5.23 8.79 -92.70 -0.81 4.42 14 5 C 0.37 10.29 12.25 180.46 2.21 12.50 14 6 N -0.66 -29.66 10.46 -317.67 -3.32 -32.98 14 7 C 0.46 25.79 6.54 86.82 0.57 26.36 14 8 O -0.58 -38.58 13.66 -5.14 -0.07 -38.65 14 9 C -0.11 -5.48 4.80 -19.74 -0.09 -5.57 14 10 C -0.46 -27.19 8.15 23.36 0.19 -27.00 14 11 H 0.07 4.20 7.88 -2.91 -0.02 4.17 14 12 C 0.07 4.24 5.05 85.24 0.43 4.67 14 13 N -0.85 -52.58 13.93 21.83 0.30 -52.28 14 14 Si 0.95 52.37 24.79 68.60 1.70 54.07 14 15 H -0.28 -17.40 6.28 99.48 0.62 -16.77 14 16 H -0.27 -13.53 7.11 99.48 0.71 -12.83 14 17 H -0.27 -14.13 7.11 99.48 0.71 -13.42 14 18 H 0.07 1.90 8.14 -2.39 -0.02 1.88 14 19 H 0.06 2.21 7.17 -2.38 -0.02 2.20 14 20 H 0.10 1.85 8.14 -2.39 -0.02 1.83 14 21 H 0.26 3.10 8.06 -2.91 -0.02 3.07 14 22 H 0.29 16.20 8.30 -92.71 -0.77 15.43 14 Total: -1.00 -87.76 198.43 2.30 -85.47 By element: Atomic # 1 Polarization: -10.37 SS G_CDS: 0.35 Total: -10.02 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.29 Total: 9.09 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -3.97 Total: -99.95 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.07 Total: -38.65 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 1.70 Total: 54.07 kcal Total: -87.76 2.30 -85.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213655984.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.865 kcal (2) G-P(sol) polarization free energy of solvation -87.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds